Forward-in-time simulation of chromosomal rearrangements: The invisible backbone that sustains long-term adaptation

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  • dc.contributor.author Banse, Paul
  • dc.contributor.author Luiselli, Juliette
  • dc.contributor.author Parsons, David P.
  • dc.contributor.author Grohens, Théotime
  • dc.contributor.author Foley, Marco
  • dc.contributor.author Trujillo, Leonardo
  • dc.contributor.author Rouzaud-Cornabas, Jonathan
  • dc.contributor.author Knibbe, Carole
  • dc.contributor.author Beslon, Guillaume
  • dc.date.accessioned 2024-02-12T06:36:50Z
  • dc.date.available 2024-02-12T06:36:50Z
  • dc.date.issued 2023
  • dc.description Data de publicació electrònica: 11-12-2023
  • dc.description.abstract While chromosomal rearrangements are ubiquitous in all domains of life, very little is known about their evolutionary significance, mostly because, apart from a few specifically studied and well-documented mechanisms (interaction with recombination, gene duplication, etc.), very few models take them into account. As a consequence, we lack a general theory to account for their direct and indirect contributions to evolution. Here, we propose Aevol, a forward-in-time simulation platform specifically dedicated to unravelling the evolutionary significance of chromosomal rearrangements (CR) compared to local mutations (LM). Using the platform, we evolve populations of organisms in four conditions characterized by an increasing diversity of mutational operators-from substitutions alone to a mix of substitutions, InDels and CR-but with a constant global mutational rate. Despite being almost invisible in the phylogeny owing to the scarcity of their fixation in the lineages, we show that CR make a decisive contribution to the evolutionary dynamics by comparing the outcome in these four conditions. As expected, chromosomal rearrangements allow fast expansion of the gene repertoire through gene duplication, but they also reduce the effect of diminishing-returns epistasis, hence sustaining adaptation on the long-run. At last, we show that chromosomal rearrangements tightly regulate the size of the genome through indirect selection for reproductive robustness. Overall, these results confirm the need to improve our theoretical understanding of the contribution of chromosomal rearrangements to evolution and show that dedicated platforms like Aevol can efficiently contribute to this agenda.
  • dc.format.mimetype application/pdf
  • dc.identifier.citation Banse P, Luiselli J, Parsons DP, Grohens T, Foley M, Trujillo L, Rouzaud-Cornabas J, Knibbe C, Beslon G. Forward-in-time simulation of chromosomal rearrangements: The invisible backbone that sustains long-term adaptation. Mol Ecol. 2023 Dec 11. DOI: 10.1111/mec.17234
  • dc.identifier.doi http://dx.doi.org/10.1111/mec.17234
  • dc.identifier.issn 0962-1083
  • dc.identifier.uri http://hdl.handle.net/10230/59062
  • dc.language.iso eng
  • dc.publisher Wiley
  • dc.relation.ispartof Mol Ecol. 2023 Dec 11
  • dc.rights © 2023 The Authors. Molecular Ecology published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
  • dc.rights.accessRights info:eu-repo/semantics/openAccess
  • dc.rights.uri http://creativecommons.org/licenses/by-nc/4.0/
  • dc.subject.keyword InDels
  • dc.subject.keyword Chromosomal rearrangements
  • dc.subject.keyword Evolution
  • dc.subject.keyword Modelling
  • dc.subject.keyword Simulation
  • dc.title Forward-in-time simulation of chromosomal rearrangements: The invisible backbone that sustains long-term adaptation
  • dc.type info:eu-repo/semantics/article
  • dc.type.version info:eu-repo/semantics/publishedVersion