RNAget: an API to securely retrieve RNA quantifications
Mostra el registre complet Registre parcial de l'ítem
- dc.contributor.author Upchurch, Sean
- dc.contributor.author Palumbo, Emilio
- dc.contributor.author Adams, Jeremy
- dc.contributor.author Bujold, David
- dc.contributor.author Bourque, Guillaume
- dc.contributor.author Nedzel, Jared
- dc.contributor.author Graham, Keenan
- dc.contributor.author Kagda, Meenakshi S.
- dc.contributor.author Assis, Pedro
- dc.contributor.author Hitz, Benjamin
- dc.contributor.author Righi, Emilio
- dc.contributor.author Guigó Serra, Roderic
- dc.contributor.author Wold, Barbara J.
- dc.contributor.author GA4GH RNA-Seq Task Team
- dc.date.accessioned 2023-06-02T06:03:30Z
- dc.date.available 2023-06-02T06:03:30Z
- dc.date.issued 2023
- dc.description.abstract Large-scale sharing of genomic quantification data requires standardized access interfaces. In this Global Alliance for Genomics and Health project, we developed RNAget, an API for secure access to genomic quantification data in matrix form. RNAget provides for slicing matrices to extract desired subsets of data and is applicable to all expression matrix-format data, including RNA sequencing and microarrays. Further, it generalizes to quantification matrices of other sequence-based genomics such as ATAC-seq and ChIP-seq.
- dc.format.mimetype application/pdf
- dc.identifier.citation Upchurch S, Palumbo E, Adams J, Bujold D, Bourque G, Nedzel J, Graham K, Kagda MS, Assis P, Hitz B, Righi E, Guigó R, Wold BJ; GA4GH RNA-Seq Task Team. RNAget: an API to securely retrieve RNA quantifications. Bioinformatics. 2023 Apr 3;39(4):btad126. DOI: 10.1093/bioinformatics/btad126
- dc.identifier.doi http://dx.doi.org/10.1093/bioinformatics/btad126
- dc.identifier.issn 1367-4803
- dc.identifier.uri http://hdl.handle.net/10230/57024
- dc.language.iso eng
- dc.publisher Oxford University Press
- dc.relation.ispartof Bioinformatics. 2023 Apr 3;39(4):btad126
- dc.rights © The Author(s) 2023. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
- dc.rights.accessRights info:eu-repo/semantics/openAccess
- dc.rights.uri http://creativecommons.org/licenses/by/4.0/
- dc.title RNAget: an API to securely retrieve RNA quantifications
- dc.type info:eu-repo/semantics/article
- dc.type.version info:eu-repo/semantics/publishedVersion