RNAget: an API to securely retrieve RNA quantifications
RNAget: an API to securely retrieve RNA quantifications
Citació
- Upchurch S, Palumbo E, Adams J, Bujold D, Bourque G, Nedzel J, Graham K, Kagda MS, Assis P, Hitz B, Righi E, Guigó R, Wold BJ; GA4GH RNA-Seq Task Team. RNAget: an API to securely retrieve RNA quantifications. Bioinformatics. 2023 Apr 3;39(4):btad126. DOI: 10.1093/bioinformatics/btad126
Enllaç permanent
Descripció
Resum
Large-scale sharing of genomic quantification data requires standardized access interfaces. In this Global Alliance for Genomics and Health project, we developed RNAget, an API for secure access to genomic quantification data in matrix form. RNAget provides for slicing matrices to extract desired subsets of data and is applicable to all expression matrix-format data, including RNA sequencing and microarrays. Further, it generalizes to quantification matrices of other sequence-based genomics such as ATAC-seq and ChIP-seq.