Handling confounding variables in statistical shape analysis - application to cardiac remodelling

dc.contributor.authorBernardino Perez, Gabriel
dc.contributor.authorBenkarim, Oualid M.
dc.contributor.authorSanz de la Garza, Maria
dc.contributor.authorPrat Gonzàlez, Susanna
dc.contributor.authorSepúlveda-Martínez, Álvaro
dc.contributor.authorCrispi Brillas, Fàtima
dc.contributor.authorSitges, Marta
dc.contributor.authorButakoff, Constantine
dc.contributor.authorCraene, Mathieu de
dc.contributor.authorBijnens, Bart
dc.contributor.authorGonzález Ballester, Miguel Ángel, 1973-
dc.date.accessioned2020-07-21T09:51:15Z
dc.date.issued2020
dc.description.abstractStatistical shape analysis is a powerful tool to assess organ morphologies and find shape changes associated to a particular disease. However, imbalance in confounding factors, such as demographics might invalidate the analysis if not taken into consideration. Despite the methodological advances in the field, providing new methods that are able to capture complex and regional shape differences, the relationship between non-imaging information and shape variability has been overlooked. We present a linear statistical shape analysis framework that finds shape differences unassociated to a controlled set of confounding variables. It includes two confounding correction methods: confounding deflation and adjustment. We applied our framework to a cardiac magnetic resonance imaging dataset, consisting of the cardiac ventricles of 89 triathletes and 77 controls, to identify cardiac remodelling due to the practice of endurance exercise. To test robustness to confounders, subsets of this dataset were generated by randomly removing controls with low body mass index, thus introducing imbalance. The analysis of the whole dataset indicates an increase of ventricular volumes and myocardial mass in athletes, which is consistent with the clinical literature. However, when confounders are not taken into consideration no increase of myocardial mass is found. Using the downsampled datasets, we find that confounder adjustment methods are needed to find the real remodelling patterns in imbalanced datasets.en
dc.description.sponsorshipThis study was partially supported by the Spanish Ministry of Economy and Competitiveness (grant DEP2013-44923- P, TIN2014-52923-R; Maria de Maeztu Units of Excellence Programme - MDM-2015-0502), el Fondo Europeo de Desarrollo Regional (FEDER) , the European Union under the Horizon 2020 Programme for Research, Innovation (grant agreement No. 642676 CardioFunXion) and Erasmus+ Programme (Framework Agreement number: 2013-0040), la Caixa Foundation (LCF/PR/GN14/10270005, LCF/PR/GN18/10310003), Instituto de Salud Carlos III (PI14/00226, PI17/00675) integrated in the Plan Nacional I+D+I and AGAUR 2017 SGR grant n 1531.
dc.format.mimetypeapplication/pdf
dc.identifier.citationBernardino G, Benkarim Q, Sanz de la Garza M, Prat-Gonzàlez S, Sepulveda-Martinez A, Crispi F, Sitges M, Butakoff C, De Craene M, Bijnens B, González Ballester MA. Handling confounding variables in statistical shape analysis - application to cardiac remodelling. Med Image Anal. 2020 Jul 19:101792. DOI: 10.1016/j.media.2020.101792
dc.identifier.doihttp://dx.doi.org/10.1016/j.media.2020.101792
dc.identifier.issn1361-8415
dc.identifier.urihttp://hdl.handle.net/10230/45146
dc.language.isoeng
dc.publisherElsevier
dc.relation.ispartofMedical Image Analysis. 2020 Jul 19:101792
dc.relation.projectIDinfo:eu-repo/grantAgreement/ES/1PE/DEP2013-44923- P
dc.relation.projectIDinfo:eu-repo/grantAgreement/ES/1PE/TIN2014-52923-R
dc.relation.projectIDinfo:eu-repo/grantAgreement/EC/H2020/642676
dc.rights© Elsevier http://dx.doi.org/10.1016/j.media.2020.101792
dc.rights.accessRightsinfo:eu-repo/semantics/openAccess
dc.subject.keywordConfounder correctionen
dc.subject.keywordStatistical shape analysisen
dc.subject.keywordComputational anatomyen
dc.subject.keywordCardiac remodellingen
dc.titleHandling confounding variables in statistical shape analysis - application to cardiac remodellingen
dc.typeinfo:eu-repo/semantics/article
dc.type.versioninfo:eu-repo/semantics/acceptedVersion

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