Measures of spike train synchrony for data with multiple time scales

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• dc.contributor.author Malvestio, Irene
• dc.contributor.author Satuvuori, Eero
• dc.contributor.author Mulansky, Mario
• dc.contributor.author Bozanic, Nebojsa
• dc.contributor.author Malvestio, Irene
• dc.contributor.author Zeldenrust, Fleur
• dc.contributor.author Lenk, Kerstin
• dc.contributor.author Kreuz, Thomas
• dc.date.accessioned 2021-02-05T11:08:36Z
• dc.date.available 2021-02-05T11:08:36Z
• dc.date.issued 2017
• dc.description.abstract Background Measures of spike train synchrony are widely used in both experimental and computational neuroscience. Time-scale independent and parameter-free measures, such as the ISI-distance, the SPIKE-distance and SPIKE-synchronization, are preferable to time scale parametric measures, since by adapting to the local firing rate they take into account all the time scales of a given dataset. New method In data containing multiple time scales (e.g. regular spiking and bursts) one is typically less interested in the smallest time scales and a more adaptive approach is needed. Here we propose the A-ISI-distance, the A-SPIKE-distance and A-SPIKE-synchronization, which generalize the original measures by considering the local relative to the global time scales. For the A-SPIKE-distance we also introduce a rate-independent extension called the RIA-SPIKE-distance, which focuses specifically on spike timing. Results The adaptive generalizations A-ISI-distance and A-SPIKE-distance allow to disregard spike time differences that are not relevant on a more global scale. A-SPIKE-synchronization does not any longer demand an unreasonably high accuracy for spike doublets and coinciding bursts. Finally, the RIA-SPIKE-distance proves to be independent of rate ratios between spike trains. Comparison with existing methods We find that compared to the original versions the A-ISI-distance and the A-SPIKE-distance yield improvements for spike trains containing different time scales without exhibiting any unwanted side effects in other examples. A-SPIKE-synchronization matches spikes more efficiently than SPIKE-synchronization. Conclusions With these proposals we have completed the picture, since we now provide adaptive generalized measures that are sensitive to firing rate only (A-ISI-distance), to timing only (ARI-SPIKE-distance), and to both at the same time (A-SPIKE-distance).en
• dc.description.sponsorship E.S., I.M., and T.K. acknowledge support from the European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie Grant Agreement No. 642563 ‘Complex Oscillatory Systems: Modeling and Analysis’ (COSMOS). M.M., N.B., and T.K. acknowledge support from the European Commission through the Marie Curie Initial Training Network ‘Neural Engineering Transformative Technologies’ (NETT), project No. 289146. K.L. was supported by the 3DNeuroN project in the European Union's Seventh Framework Programme, Future and Emerging Technologies [Grant Agreement No. 296590] and by the Tekes funded Human Spare Part project.
• dc.format.mimetype application/pdf
• dc.identifier.citation Satuvuori E, Mulansky M, Bozanic N, Malvestio I, Zeldenrust F, Lenk K, Kreuz T. Measures of spike train synchrony for data with multiple time scales. J Neurosci Methods. 2017 Aug 1;287:25-38. DOI: 10.1016/j.jneumeth.2017.05.028
• dc.identifier.doi http://dx.doi.org10.1016/j.jneumeth.2017.05.028
• dc.identifier.issn 0165-0270
• dc.identifier.uri http://hdl.handle.net/10230/46365
• dc.language.iso eng
• dc.publisher Elsevier
• dc.relation.ispartof Journal of Neuroscience Methods. 2017 Aug 1;287:25-38
• dc.relation.projectID info:eu-repo/grantAgreement/EC/H2020/642563
• dc.relation.projectID info:eu-repo/grantAgreement/EC/FP7/296590
• dc.rights © 2017 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY-NC-NDlicense (http://creativecommons.org/licenses/by-nc-nd/4.0/).
• dc.rights.accessRights info:eu-repo/semantics/openAccess
• dc.rights.uri http://creativecommons.org/licenses/by-nc-nd/4.0/
• dc.subject.keyword Data analysisen
• dc.subject.keyword Spike train distancesen
• dc.subject.keyword ISI-distanceen
• dc.subject.keyword SPIKE-distanceen
• dc.subject.keyword SPIKE-synchronizationen
• dc.subject.keyword Bursten
• dc.subject.keyword Time-scaleen
• dc.title Measures of spike train synchrony for data with multiple time scalesen
• dc.type info:eu-repo/semantics/article
• dc.type.version info:eu-repo/semantics/publishedVersion