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dc.contributor.author Pohl, Andy, 1979-
dc.contributor.author Beato, Miguel
dc.date.accessioned 2020-12-02T07:17:22Z
dc.date.available 2020-12-02T07:17:22Z
dc.date.issued 2014
dc.identifier.citation Pohl A, Beato M. bwtool: a tool for bigWig files. Bioinformatics. 2014; 30(11):1618-9. DOI: 10.1093/bioinformatics/btu056
dc.identifier.issn 1367-4803
dc.identifier.uri http://hdl.handle.net/10230/45929
dc.description.abstract BigWig files are a compressed, indexed, binary format for genome-wide signal data for calculations (e.g. GC percent) or experiments (e.g. ChIP-seq/RNA-seq read depth). bwtool is a tool designed to read bigWig files rapidly and efficiently, providing functionality for extracting data and summarizing it in several ways, globally or at specific regions. Additionally, the tool enables the conversion of the positions of signal data from one genome assembly to another, also known as 'lifting'. We believe bwtool can be useful for the analyst frequently working with bigWig data, which is becoming a standard format to represent functional signals along genomes. The article includes supplementary examples of running the software.
dc.description.sponsorship Supported by grants to M.B. from the Departament d'Innovació Universitat i Empresa (DIUiE) 2009SGR574, Ministerio de Educación y Ciencia (MEC) BFU2010-01531 and CSD2006-00049.
dc.format.mimetype application/pdf
dc.language.iso eng
dc.publisher Oxford University Press
dc.relation.ispartof Bioinformatics. 2014; 30(11):1618-9
dc.rights © The Author 2014. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
dc.rights.uri http://creativecommons.org/licenses/by/3.0/
dc.title bwtool: a tool for bigWig files
dc.type info:eu-repo/semantics/article
dc.identifier.doi http://dx.doi.org/10.1093/bioinformatics/btu056
dc.relation.projectID info:eu-repo/grantAgreement/ES/3PN/BFU2010-01531
dc.rights.accessRights info:eu-repo/semantics/openAccess
dc.type.version info:eu-repo/semantics/publishedVersion

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