Affinity and competition for TBP are molecular determinants of gene expression noise
Mostra el registre complet Registre parcial de l'ítem
- dc.contributor.author Ravarani, Charles N.J.ca
- dc.contributor.author Chalancon, Guilhemca
- dc.contributor.author Breker, Michalca
- dc.contributor.author Sanchez de Groot, Nataliaca
- dc.contributor.author Madan Babu, M.ca
- dc.date.accessioned 2017-01-25T07:42:33Z
- dc.date.available 2017-01-25T07:42:33Z
- dc.date.issued 2016ca
- dc.description.abstract Cell-to-cell variation in gene expression levels (noise) generates phenotypic diversity and is an important phenomenon in evolution, development and disease. TATA-box binding protein (TBP) is an essential factor that is required at virtually every eukaryotic promoter to initiate transcription. While the presence of a TATA-box motif in the promoter has been strongly linked with noise, the molecular mechanism driving this relationship is less well understood. Through an integrated analysis of multiple large-scale data sets, computer simulation and experimental validation in yeast, we provide molecular insights into how noise arises as an emergent property of variable binding affinity of TBP for different promoter sequences, competition between interaction partners to bind the same surface on TBP (to either promote or disrupt transcription initiation) and variable residence times of TBP complexes at a promoter. These determinants may be fine-tuned under different conditions and during evolution to modulate eukaryotic gene expression noise.
- dc.format.mimetype application/pdfca
- dc.identifier.citation Ravarani CNJ, Chalancon G, Breker M, Sanchez de Groot N, Madan Babu M. Affinity and competition for TBP are molecular determinants of gene expression noise. Nature Communications. 2016; 7: 10417. DOI: 10.1038/ncomms10417ca
- dc.identifier.doi http://dx.doi.org/10.1038/ncomms10417
- dc.identifier.issn 2041-1723ca
- dc.identifier.uri http://hdl.handle.net/10230/27976
- dc.language.iso engca
- dc.publisher Nature Publishing Groupca
- dc.relation.ispartof Nature Communications. 2016; 7: 10417
- dc.rights © Nature Publishing Group. This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ca
- dc.rights.accessRights info:eu-repo/semantics/openAccessca
- dc.rights.uri http://creativecommons.org/licenses/by/4.0/
- dc.subject.keyword Download Citation
- dc.subject.keyword Cellular noise
- dc.subject.keyword Computational biology and bioinformatics
- dc.subject.keyword Gene expression
- dc.title Affinity and competition for TBP are molecular determinants of gene expression noiseca
- dc.type info:eu-repo/semantics/articleca
- dc.type.version info:eu-repo/semantics/publishedVersionca