Reconstructing the last common ancestor of all eukaryotes

dc.contributor.authorRichards, Thomas A.
dc.contributor.authorLeger, Michelle M.
dc.contributor.authorRichter, Daniel J.
dc.contributor.authorRuiz Trillo, Iñaki
dc.contributor.authorSebé-Pedrós, Arnau
dc.contributor.authorWideman, Jeremy G.
dc.date.accessioned2025-02-07T08:07:21Z
dc.date.available2025-02-07T08:07:21Z
dc.date.issued2024
dc.description.abstractUnderstanding the origin of eukaryotic cells is one of the most difficult problems in all of biology. A key challenge relevant to the question of eukaryogenesis is reconstructing the gene repertoire of the last eukaryotic common ancestor (LECA). As data sets grow, sketching an accurate genomics-informed picture of early eukaryotic cellular complexity requires provision of analytical resources and a commitment to data sharing. Here, we summarise progress towards understanding the biology of LECA and outline a community approach to inferring its wider gene repertoire. Once assembled, a robust LECA gene set will be a useful tool for evaluating alternative hypotheses about the origin of eukaryotes and understanding the evolution of traits in all descendant lineages, with relevance in diverse fields such as cell biology, microbial ecology, biotechnology, agriculture, and medicine. In this Consensus View, we put forth the status quo and an agreed path forward to reconstruct LECA's gene content.
dc.description.sponsorshipThis work was supported by the Royal Society University Research Fellowship grant URF\R\191005 to TAR; Berlin Institute for Advanced Study (Wissenschaftskolleg zu Berlin) Fellowship to TAR; Gordon and Betty Moore Foundation Grant (GBMF9730) to TAR; HORIZON EUROPE European Research Council grant (803151) to LE; Simons Foundation Grant (735923LPI) to LE and AJR; Natural Sciences and Engineering Research Council of Canada Discovery Grant (RGPIN-2019-05058) to JMA; Gordon and Betty Moore Foundation Grant (GBMF5782) to JMA; Arthur B. McDonald Chair of Research Excellence at Dalhousie University to JMA; Natural Sciences and Engineering Research Council of Canada (RGPIN-2022-05430) to AJR; Natural Sciences and Engineering Research Council of Canada (RES0043758 & RES0046091) to JBD; National Science Foundation (2119963 & 2405455) to JGW, and Gordon and Betty Moore Foundation Grant (GBMF10600) to JGW. The funders had no role in the decision to publish, or the preparation of the manuscript.
dc.format.mimetypeapplication/pdf
dc.identifier.citationRichards TA, Eme L, Archibald JM, Leonard G, Coelho SM, de Mendoza A, et al. Reconstructing the last common ancestor of all eukaryotes. PLoS Biol. 2024 Nov 25;22(11):e3002917. DOI: 10.1371/journal.pbio.3002917
dc.identifier.doihttp://dx.doi.org/10.1371/journal.pbio.3002917
dc.identifier.issn1544-9173
dc.identifier.urihttp://hdl.handle.net/10230/69519
dc.language.isoeng
dc.publisherPublic Library of Science (PLoS)
dc.relation.ispartofPLoS Biol. 2024 Nov 25;22(11):e3002917
dc.relation.projectIDinfo:eu-repo/grantAgreement/EC/H2020/803151
dc.rights© 2024 Richards et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
dc.rights.accessRightsinfo:eu-repo/semantics/openAccess
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subject.keywordEukaryota
dc.subject.keywordEukaryotic evolution
dc.subject.keywordPhylogenetics
dc.subject.keywordEvolutionary genetics
dc.subject.keywordPhylogenetic analysis
dc.subject.keywordHidden Markov models
dc.subject.keywordGenomics
dc.subject.keywordMicrobial evolution
dc.titleReconstructing the last common ancestor of all eukaryotes
dc.typeinfo:eu-repo/semantics/article
dc.type.versioninfo:eu-repo/semantics/publishedVersion

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