Gene expression profiling in the hibernating primate, cheirogaleus medius.
Mostra el registre complet Registre parcial de l'ítem
- dc.contributor.author Faherty, Sheena L.ca
- dc.contributor.author Villanueva Cañas, José Luis, 1984-ca
- dc.contributor.author Klopfer, Peter H.ca
- dc.contributor.author Albà Soler, Marca
- dc.contributor.author Yoder, Anne D.ca
- dc.date.accessioned 2017-01-23T09:55:19Z
- dc.date.available 2017-01-23T09:55:19Z
- dc.date.issued 2016
- dc.description.abstract Hibernation is a complex physiological response that some mammalian species employ to evade energetic demands. Previous work in mammalian hibernators suggests that hibernation is activated not by a set of genes unique to hibernators, but by differential expression of genes that are present in all mammals. This question of universal genetic mechanisms requires further investigation and can only be tested through additional investigations of phylogenetically dispersed species. To explore this question, we use RNA-Seq to investigate gene expression dynamics as they relate to the varying physiological states experienced throughout the year in a group of primate hibernators-Madagascar's dwarf lemurs (genus Cheirogaleus). In a novel experimental approach, we use longitudinal sampling of biological tissues as a method for capturing gene expression profiles from the same individuals throughout their annual hibernation cycle. We identify 90 candidate genes that have variable expression patterns when comparing two active states (Active 1 and Active 2) with a torpor state. These include genes that are involved in metabolic pathways, feeding behavior, and circadian rhythms, as might be expected to correlate with seasonal physiological state changes. The identified genes appear to be critical for maintaining the health of an animal that undergoes prolonged periods of metabolic depression concurrent with the hibernation phenotype. By focusing on these differentially expressed genes in dwarf lemurs, we compare gene expression patterns in previously studied mammalian hibernators. Additionally, by employing evolutionary rate analysis, we find that hibernation-related genes do not evolve under positive selection in hibernating species relative to nonhibernators.ca
- dc.description.sponsorship This work was supported by grants from the Society of Integrative and Comparative Biology and Sigma Xi to S.L.F., a National Science Foundation Doctoral Research Improvement Grant (NSF-BCS 1455809 to A.D.Y. and S.L.F.), a grant from the Duke University Institute for Genome Science and Policy to A.D.Y., and funding from the Ministerio de Economı´a y Competitividad of the Spanish Government (BIO2009-08160 to J.L.V.C. and BFU2012-36820 to J.L.V.C. and M.M.A.); and Fundacio´ ICREA to M.M.A.
- dc.format.mimetype application/pdfca
- dc.identifier.citation Faherty SL, Villanueva-Cañas JL, Klopfer PH, Albà MM, Yoder AD. Gene expression profiling in the hibernating primate, cheirogaleus medius. Genome Biol Evol. 2016 Aug 25;8(8):2413-26. DOI: 10.1093/gbe/evw163ca
- dc.identifier.doi http://dx.doi.org/10.1093/gbe/evw163
- dc.identifier.issn 1759-6653
- dc.identifier.uri http://hdl.handle.net/10230/27954
- dc.language.iso engca
- dc.publisher Oxford University Pressca
- dc.relation.ispartof Genome Biology and Evolution. 2016 Aug 25;8(8):2413-26
- dc.rights © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.comca
- dc.rights.accessRights info:eu-repo/semantics/openAccessca
- dc.rights.uri https://creativecommons.org/licenses/by-nc/4.0/ca
- dc.subject.other RNAca
- dc.subject.other Gensca
- dc.subject.other genèticaca
- dc.title Gene expression profiling in the hibernating primate, cheirogaleus medius.ca
- dc.type info:eu-repo/semantics/articleca
- dc.type.version info:eu-repo/semantics/acceptedVersionca