Integrative cancer genomics (IntOGen) in Biomart
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- dc.contributor.author Pérez Llamas, Christian, 1976-ca
- dc.contributor.author Gundem, Gunesca
- dc.contributor.author López Bigas, Núriaca
- dc.date.accessioned 2015-12-16T15:23:23Z
- dc.date.available 2015-12-16T15:23:23Z
- dc.date.issued 2011
- dc.description.abstract Recently, we created IntOGen, a resource to integrate a large amount of cancer genomic data. IntOGen aims at facilitating the detection of the most recurrent alterations that drive tumorigenesis. It collates, annotates and analyzes high-throughput data about transcriptional, genomic and mutational changes taking place in tumors from different studies annotated with specific cancer types. Currently, it contains 118 studies for mRNA expression profiling and 188 studies for genomic alterations covering in total 64 different tumor topographies. In this article, we describe the Biomart portal for IntOGen. The portal provides easy access to different types of data and facilitates the bulk download of all the analysis results. Here, we describe the general features of IntOGen and give example queries to demonstrate its use. Database URL: www.intogen.org.ca
- dc.format.mimetype application/pdfca
- dc.identifier.citation Perez-Llamas C, Gundem G, Lopez-Bigas N. Integrative cancer genomics (IntOGen) in Biomart. Database : the journal of biological databases and curation. 2011;2011:bar039. DOI: 10.1093/database/bar039ca
- dc.identifier.doi http://dx.doi.org/10.1093/database/bar039
- dc.identifier.issn 1758-0463
- dc.identifier.uri http://hdl.handle.net/10230/25449
- dc.language.iso engca
- dc.publisher Oxford University Pressca
- dc.relation.ispartof Database: the journal of biological databases and curation. 2011;2011:bar039
- dc.rights © 2011 Perez-Llamas et al. This is Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.ca
- dc.rights.accessRights info:eu-repo/semantics/openAccessca
- dc.rights.uri http://creativecommons.org/licenses/by-nc/2.5ca
- dc.subject.other Genòmicaca
- dc.subject.other RNA missatgerca
- dc.subject.other Bases de dadesca
- dc.title Integrative cancer genomics (IntOGen) in Biomartca
- dc.type info:eu-repo/semantics/articleca
- dc.type.version info:eu-repo/semantics/publishedVersionca