SBILib: a handle for protein modeling and engineering

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• dc.contributor.author Gohl, Patrick
• dc.contributor.author Bonet Martínez, Jaume, 1982-
• dc.contributor.author Fornés Crespo, Oriol, 1983-
• dc.contributor.author Planas Iglesias, Joan, 1980-
• dc.contributor.author Fernández Fuentes, Narcís
• dc.contributor.author Oliva Miguel, Baldomero
• dc.date.accessioned 2023-12-12T06:58:04Z
• dc.date.available 2023-12-12T06:58:04Z
• dc.date.issued 2023
• dc.description.abstract Summary: The SBILib Python library provides an integrated platform for the analysis of macromolecular structures and interactions. It combines simple 3D file parsing and workup methods with more advanced analytical tools. SBILib includes modules for macromolecular interactions, loops, super-secondary structures, and biological sequences, as well as wrappers for external tools with which to integrate their results and facilitate the comparative analysis of protein structures and their complexes. The library can handle macromolecular complexes formed by proteins and/or nucleic acid molecules (i.e. DNA and RNA). It is uniquely capable of parsing and calculating protein super-secondary structure and loop geometry. We have compiled a list of example scenarios which SBILib may be applied to and provided access to these within the library. Availability and implementation: SBILib is made available on Github at https://github.com/structuralbioinformatics/SBILib.
• dc.description.sponsorship This work was supported by grants [PID2020-113203RB-I00] and “Unidad de Excelencia María de Maeztu” [ref: CEX2018-000792-M], funded by the MCIN and the AEI [DOI: 10.13039/501100011033]. J.P.-I. acknowledges support from the Czech Ministry of Education [EXCELES LX22NPO5102].
• dc.format.mimetype application/pdf
• dc.identifier.citation Gohl P, Bonet J, Fornes O, Planas-Iglesias J, Fernandez-Fuentes N, Oliva B. SBILib: a handle for protein modeling and engineering. Bioinformatics. 2023 Oct 3;39(10):btad613. DOI: 10.1093/bioinformatics/btad613
• dc.identifier.doi http://dx.doi.org/10.1093/bioinformatics/btad613
• dc.identifier.issn 1367-4803
• dc.identifier.uri http://hdl.handle.net/10230/58517
• dc.language.iso eng
• dc.publisher Oxford University Press
• dc.relation.ispartof Bioinformatics. 2023 Oct 3;39(10):btad613
• dc.relation.projectID info:eu-repo/grantAgreement/ES/2PE/PID2020-113203RB-I00
• dc.relation.projectID info:eu-repo/grantAgreement/ES/2PE/CEX2018-000792-M
• dc.rights © The Author(s) 2023. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
• dc.rights.accessRights info:eu-repo/semantics/openAccess
• dc.rights.uri http://creativecommons.org/licenses/by/4.0/
• dc.subject.other Macromolècules
• dc.subject.other Bioinformàtica
• dc.title SBILib: a handle for protein modeling and engineering
• dc.type info:eu-repo/semantics/article
• dc.type.version info:eu-repo/semantics/publishedVersion