QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories

Olivella, Roger; Chiva, Cristina; Serret, Marc; Mancera, Daniel; Cozzuto, Luca; Hermoso Pulido, Antonio; Borràs, Eva; Espadas, Guadalupe; Morales Sanfrutos, Julia; Pastor, Olga; Solé, Amanda; Ponomarenko, Julia; Sabidó Aguadé, Eduard, 1981-

QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories

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dc.contributor.author Olivella, Roger
dc.contributor.author Chiva, Cristina
dc.contributor.author Serret, Marc
dc.contributor.author Mancera, Daniel
dc.contributor.author Cozzuto, Luca
dc.contributor.author Hermoso Pulido, Antonio
dc.contributor.author Borràs, Eva
dc.contributor.author Espadas, Guadalupe
dc.contributor.author Morales Sanfrutos, Julia
dc.contributor.author Pastor, Olga
dc.contributor.author Solé, Amanda
dc.contributor.author Ponomarenko, Julia
dc.contributor.author Sabidó Aguadé, Eduard, 1981-
dc.date.accessioned 2021-05-25T12:22:59Z
dc.date.available 2021-05-25T12:22:59Z
dc.date.issued 2021
dc.description.abstract QCloud is a cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, and automated data processing. Since its release, QCloud has facilitated automated quality control for proteomics experiments in many laboratories. QCloud provides a quick and effortless evaluation of instrument performance that helps to overcome many analytical challenges derived from clinical and translational research. Here we present an improved version of the system, QCloud2. This new version includes enhancements in the scalability and reproducibility of the quality-control pipelines, and it features an improved front end for data visualization, user management, and chart annotation. The QCloud2 system also includes programmatic access and a standalone local version.
dc.description.sponsorship The CRG/UPF Proteomics Unit is part of the Spanish Infrastructure for Omics Technologies (ICTS OmicsTech), and it is a member of the ProteoRed PRB3 consortium, which is supported by grant PT17/0019 of the PE I+D+i 2013−2016 from the Instituto de Salud Carlos III (ISCIII), ERDF, and “Secretaria d’Universitats i Recerca del Departament d’Econòmia i Coneixement de la Generalitat de Catalunya” (2017SGR595). This project was supported by EPIC-XS, project number 823839, funded by the Horizon 2020 Programme of the European Union. We also acknowledge support of the Spanish Ministry of Science and Innovation to the EMBL partnership, the Centro de Excelencia Severo Ochoa and the CERCA Programme from Generalitat de Catalunya
dc.format.mimetype application/pdf
dc.identifier.citation Olivella R, Chiva C, Serret M, Mancera D, Cozzuto L, Hermoso A et al. QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories. J Proteome Res. 2021 Apr 2;20(4):2010-2013. DOI: 10.1021/acs.jproteome.0c00853
dc.identifier.doi http://dx.doi.org/10.1021/acs.jproteome.0c00853
dc.identifier.issn 1535-3893
dc.identifier.uri http://hdl.handle.net/10230/47648
dc.language.iso eng
dc.publisher American Chemical Society (ACS)
dc.relation.projectID info:eu-repo/grantAgreement/EC/H2020/823839
dc.rights.accessRights info:eu-repo/semantics/openAccess
dc.rights.uri https://creativecommons.org/licenses/by-nc-nd/4.0/
dc.subject.other Computació en núvol
dc.subject.other Espectrometria de masses
dc.subject.other Proteòmica
dc.title QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories
dc.type info:eu-repo/semantics/article
dc.type.version info:eu-repo/semantics/publishedVersion

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