Genome-wide analysis of TIAR RNA ligands in mouse macrophages before and after LPS stimulation
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- dc.contributor.author Kharraz, Yacine
- dc.contributor.author Lefort, Anne
- dc.contributor.author Libert, Frédérick
- dc.contributor.author Mann, Christopher J.
- dc.contributor.author Gueydan, Cyril
- dc.contributor.author Kruys, Véronique
- dc.date.accessioned 2024-01-29T07:20:43Z
- dc.date.available 2024-01-29T07:20:43Z
- dc.date.issued 2016
- dc.description.abstract TIA-1 related protein (TIAR) is a RNA-binding protein involved in several steps of gene expression such as RNA splicing Aznarez et al. (2008) [1] and translation Piecyk et al. (2000) [2]. TIAR contains three RNA recognition motifs (RRMs) allowing its interaction with specific sequences localized in the untranslated regions (UTRs) of several mRNAs. In myeloid cells, TIAR has been shown to bind and regulate the translation and stability of various mRNA-encoding proteins important for the inflammatory response, such as TNFα Piecyk et al. (2000), Gueydan et al. (1999) [2], [3], Cox-2 Cok et al. (2003) [4] or IL-8 Suswam et al. (2005) [5]. Here, we generated two macrophage-like RAW 264.7 cell lines expressing either a tagged full-length TIAR protein or a RRM2-truncated mutant unable to bind RNA with high affinity Dember et al. (1996), Kim et al. (2013) . By a combination of RNA-IP and microarray analysis (RIP-chip), we identified mRNAs specifically bound by the full-length protein both in basal conditions and in response to LPS (GSE77577).
- dc.format.mimetype application/pdf
- dc.identifier.citation Kharraz Y, Lefort A, Libert F, Mann CJ, Gueydan C, Kruys V. Genome-wide analysis of TIAR RNA ligands in mouse macrophages before and after LPS stimulation. Genomics Data. 2016 Mar;7:297-300. DOI: 10.1016/j.gdata.2016.02.007
- dc.identifier.doi http://dx.doi.org/10.1016/j.gdata.2016.02.007
- dc.identifier.issn 2213-5960
- dc.identifier.uri http://hdl.handle.net/10230/58846
- dc.language.iso eng
- dc.publisher Elsevier
- dc.relation.ispartof Genomics Data. 2016 Mar;7:297-300
- dc.rights © 2016 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
- dc.rights.accessRights info:eu-repo/semantics/openAccess
- dc.rights.uri http://creativecommons.org/licenses/by-nc-nd/4.0/
- dc.subject.keyword AU-rich element
- dc.subject.keyword LPS
- dc.subject.keyword RIP-chip
- dc.subject.keyword TIAR
- dc.subject.keyword Translation repression
- dc.title Genome-wide analysis of TIAR RNA ligands in mouse macrophages before and after LPS stimulation
- dc.type info:eu-repo/semantics/article
- dc.type.version info:eu-repo/semantics/publishedVersion