SVGMap

Rafael-Palou, Xavier; Schroeder, Michael Philipp, 1986-; López Bigas, Núria

doi:https://doi.org/10.34810/data420

SVGMap

License

Citation

Rafael-Palou, X, Schroeder, M, López Bigas, N. SVGMap. Universitat Pompeu Fabra; 2012. doi: 10.34810/data420

This citation was generated automatically.

Abstract

The aim of SVGMap is helping in the visualisation of experimental data which are associated with some graphical representation. Thus SVGMap browser allows to generate images with colored areas corresponding to the chosen data and color scale./nThe data is represented as a table and is searchable. All data as well as the generated images/figures can be exported easily through the interface./nAdditionally the tool allows to manage (add, edit or delete) experiments and configure the front-end user search appearance such as the number of images to be displayed, the scale types to use and more.

Description

Execution of SVGMap/nThis project provides a Jetty Server to run SVGMap web, which needs Sun Java 1.6 or higher installed on your machine./nIf your Operating System is a Linux or Mac OS X, then execute run.sh, in Windows use run.bat. We strongly recommend to run SVGMap from a terminal by the commands listed below!/nWhen you run SVGMap a Webserver is created at the port 8095. Access to it by opening your favourite browser and direct yourself to the address: http://localhost:8095/nKeep in mind that you may execute SVGMap only once per machine with the same port, otherwise it may create conflicts. The same applies if you already have another service running on that port. You can change the default port in the run.sh/run.bat on the following lines./nLinux/OS X: run.sh/njava -server -Djetty.port=8095 -Dsvgmap.home=data -jar lib/start-6.1.22.jar/nWindows: run.bat/njava -server -Djetty.port=8095 -jar lib/start-6.1.22.jar/nMore information at https://bg.upf.edu/forge/projects/svgmap/wiki/User_documentation

DOI

https://doi.org/10.34810/data420

Referenced by

http://dx.doi.org/10.1093/bioinformatics/btr581

Related Publication/Data

Més informació: SVGMap (Bitbucket)
Rafael-Palou X, Schroeder MP, Lopez-Bigas N. SVGMap: configurable image browser for experimental data. Bioinformatics. 2011;28(1):119-20. DOI: 10.1093/bioinformatics/btr581

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