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Examinant per Autoria "Frankish, Adam"

Mostrant 1 - 14 de 14
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    Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome

    (Cold Spring Harbor Laboratory Press (CSHL Press), 2012) Howald, Cédric; Tanzer, Andrea; Chrast, Jacqueline; Kokocinski, Felix; Derrien, Thomas; Walters, Nathalie; González, José M.; Frankish, Adam; Aken, Bronwen; Hourlier, Thibaut; Vogel, Jan-Hinnerk; White, Simon; Searle, Stephen; Harrow, Jennifer; Hubbard, Tim J.; Guigó Serra, Roderic; Reymond, Alexandre

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    Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction

    (BioMed Central, 2015) Frankish, Adam; Uszczynska-Ratajczak, Barbara; Ritchie, Graham R. S.; González, José M.; Pervouchine, Dmitri D.; Petryszak, Robert; Mudge, Jonathan M.; Fonseca, Nuno; Brazma, Alvis; Guigó Serra, Roderic; Harrow, Jennifer

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    From identification to validation to gene count

    (BioMed Central, 2010) Amid, Clara; Frankish, Adam; HAVANA; Aken, Bronwen; Ezkurdia, Iakes; Kokocinski, Felix; Gilbert, James; White, Simon; Carninci, Piero; Gingeras, Thomas R.; Guigó Serra, Roderic; Searle, Stephen; Tress, Michael; Harrow, Jennifer; Hubbard, Tim J.

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    GENCODE 2021

    (Oxford University Press, 2021) Frankish, Adam; Lagarde, Julien; Carbonell Sala, Silvia; Guigó Serra, Roderic; Flicek, Paul

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    GENCODE 2025: reference gene annotation for human and mouse

    (Oxford University Press, 2025) Mudge, Jonathan M.; Carbonell Sala, Silvia; Arnan Ros, Carme; Kaur, Gazaldeep; Palumbo, Emilio; Perteghella, Tamara; Guigó Serra, Roderic; Frankish, Adam

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    GENCODE reference annotation for the human and mouse genomes

    (Oxford University Press, 2019) Frankish, Adam; Carbonell Sala, Silvia; Lagarde, Julien; Guigó Serra, Roderic

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    GENCODE: producing a reference annotation for ENCODE

    (BioMed Central, 2006) Harrow, Jennifer; Denoeud, France; Frankish, Adam; Reymond, Alexandre; Chen, Chao-Kung; Chrast, Jacqueline; Lagarde, Julien; Gilbert, James; Storey, Roy; Swarbreck, David; Rossier, Colette; Ucla, Catherine; Hubbard, Tim J.; Antonarakis, Stylianos E.; Guigó Serra, Roderic

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    GENCODE: reference annotation for the human and mouse genomes in 2023

    (Oxford University Press, 2023) Frankish, Adam; Carbonell Sala, Silvia; Arnan Ros, Carme; Calvet, Ferriol; Lagarde, Julien; Guigó Serra, Roderic; Flicek, Paul

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    High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing

    (Nature Research, 2017) Lagarde, Julien; Uszczynska-Ratajczak, Barbara; Carbonell, Silvia; Pérez-Lluch, Sílvia; Davis, Carrie A.; Gingeras, Thomas R.; Frankish, Adam; Harrow, Jennifer; Guigó Serra, Roderic; Johnson, Rory

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    Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay

    (Oxford University Press, 2019) Pervouchine, Dmitri D.; Popov, Yaroslav; Berry, Andy; Borsari, Beatrice, 1992-; Frankish, Adam; Guigó Serra, Roderic

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    Prominent use of distal 5’ transcription start sites and discovery of a large number of additional exons in ENCODE regions

    (Cold Spring Harbor Laboratory Press-CSHL Press, 2007) Denoeud, France; Kapranov, Philipp; Ucla, Catherine; Frankish, Adam; Castelo Valdueza, Robert; Drenkow, Jorg; Lagarde, Julien; Alioto, Tyler; Manzano, Caroline; Chrast, Jacqueline; Dike, Sujit; Wyss, Carine; Henrichsen, Charlotte N.; Holroyd, Nancy; Dickson, Mark C.; Taylor, Ruth; Hance, Zahra; Foissac, Sylvain; Myers, Richard M.; Rogers, Jane; Hubbard, Tim J.; Harrow, Jennifer; Guigó Serra, Roderic; Gingeras, Thomas R.; Antonarakis, Stylianos E.; Reymond, Alexandre

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    Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

    (Cold Spring Harbor Laboratory Press-CSHL Press, 2007) Zheng, Deyou; Frankish, Adam; Baertsch, Robert; Kapranov, Philipp; Reymond, Alexandre; Choo, Siew Woh; Lu, Yontao; Denoeud, France; Antonarakis, Stylianos E.; Snyder, Michael; Ruan, Yijun; Wei, Chia-Lin; Gingeras, Thomas R.; Guigó Serra, Roderic; Harrow, Jennifer; Gerstein, Mark B.

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    Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in SCN1A

    (Nature Research, 2019) Steward, Charles A.; Uszczynska-Ratajczak, Barbara; Guigó Serra, Roderic; Frankish, Adam

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    The origins, evolution, and functional potential of alternative splicing in vertebrates

    (Oxford University Press, 2011) Mudge, Jonathan M.; Frankish, Adam; Fernández Banet, Julio; Alioto, Tyler; Derrien, Thomas; Howald, Cédric; Reymond, Alexandre; Guigó Serra, Roderic; Hubbard, Tim J.; Harrow, Jennifer

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