PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants

Sanseverino, Walter; Hermoso Pulido, Antonio; D’Alessandro, Raffaella; Vlasova, Anna; Andolfo, Giuseppe; Frusciante, Luigi; Lowy Gallego, Ernesto; Roma, Guglielmo; Ercolano, Maria Raffaella

doi:http://dx.doi.org/10.1093/nar/gks1183

PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants

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Citation

Sanseverino W, Hermoso A, D’Alessandro R, Vlasova A, Andolfo G, Frusciante L, et al. PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants. Nucleic Acids Research. 2013 Jan 1;41(D1):D1167-71. DOI: 10.1093/nar/gks1183

Abstract

The Plant Resistance Genes database (PRGdb; http://prgdb.org) is a comprehensive resource on resistance genes (R-genes), a major class of genes in plant genomes that convey disease resistance against pathogens. Initiated in 2009, the database has grown more than 6-fold to recently include annotation derived from recent plant genome sequencing projects. Release 2.0 currently hosts useful biological information on a set of 112 known and 104 310 putative R-genes present in 233 plant species and conferring resistance to 122 different pathogens. Moreover, the website has been completely redesigned with the implementation of Semantic MediaWiki technologies, which makes our repository freely accessed and easily edited by any scientists. To this purpose, we encourage plant biologist experts to join our annotation effort and share their knowledge on resistance-gene biology with the rest of the scientific community.