Two hundred and five newly assembled mitogenomes provide mixed evidence for rivers as drivers of speciation for Amazonian primates

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• dc.contributor.author Janiak, Mareike C.
• dc.contributor.author Silva, Felipe E.
• dc.contributor.author Beck, Robin M. D.
• dc.contributor.author de Vries, Dorien
• dc.contributor.author Kuderna, Lukas, 1989-
• dc.contributor.author Torosin, Nicole S.
• dc.contributor.author Melin, Amanda D.
• dc.contributor.author Marquès i Bonet, Tomàs, 1975-
• dc.contributor.author Goodhead, Ian B.
• dc.contributor.author Messias, Mariluce
• dc.contributor.author da Silva, Maria N. F.
• dc.contributor.author Sampaio, Iracilda
• dc.contributor.author Farias, Izeni P.
• dc.contributor.author Rossi, Rogerio
• dc.contributor.author de Melo, Fabiano R.
• dc.contributor.author Valsecchi, João
• dc.contributor.author Hrbek, Tomas
• dc.contributor.author Boubli, Jean P.
• dc.date.accessioned 2022-07-06T06:43:29Z
• dc.date.available 2022-07-06T06:43:29Z
• dc.date.issued 2022
• dc.description.abstract Mitochondrial DNA remains a cornerstone for molecular ecology, especially for study species from which high-quality tissue samples cannot be easily obtained. Methods using mitochondrial markers are usually reliant on reference databases, but these are often incomplete. Furthermore, available mitochondrial genomes often lack crucial metadata, such as sampling location, limiting their utility for many analyses. Here, we assembled 205 new mitochondrial genomes for platyrrhine primates, most from the Amazon and with known sampling locations. We present a dated mitogenomic phylogeny based on these samples along with additional published platyrrhine mitogenomes, and use this to assess support for the long-standing riverine barrier hypothesis (RBH), which proposes that river formation was a major driver of speciation in Amazonian primates. Along the Amazon, Negro, and Madeira rivers, we found mixed support for the RBH. While we identified divergences that coincide with a river barrier, only some occur synchronously and also overlap with the proposed dates of river formation. The most compelling evidence is for the Amazon river potentially driving speciation within bearded saki monkeys (Chiropotes spp.) and within the smallest extant platyrrhines, the marmosets and tamarins. However, we also found that even large rivers do not appear to be barriers for some primates, including howler monkeys (Alouatta spp.), uakaris (Cacajao spp.), sakis (Pithecia spp.), and robust capuchins (Sapajus spp.). Our results support a more nuanced, clade-specific effect of riverine barriers and suggest that other evolutionary mechanisms, besides the RBH and allopatric speciation, may have played an important role in the diversification of platyrrhines.
• dc.description.sponsorship This work was supported by the Natural Environment Research Council (NE/T000341/1); Brazilian National Council for Scientific and Technological Development (Conselho Nacional de Desenvolvimento Científico e Tecnológico, CNPq) (Process nos.: 563348/2010–0, 303286/2014–8, 303579/2014–5, 200502/2015–8, 302140/2020–4, 300365/2021–7, 301407/2021–5, 301925/2021–6); Higher Education Personnel Improvement Coordination (CAPES) (Process no.: 3261/2013); International Primatological Society conservation grant; The Rufford Foundation (14861–1, 23117–2), the Margot Marsh Biodiversity Foundation (SMA-CCO-G0000000023, SMA-CCO-G0000000037), Primate Conservation Inc. (no. 1713 and no. 1689). ADM is supported by the Natural Sciences and Engineering Research Council (NSERC RGPIN-2017-03782) and the Canada Research Chairs Program Primate dietary ecology and genomics (950-231257). TMB is supported by funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No. 864203), BFU2017-86471-P (MINECO/FEDER, UE), "Unidad de Excelencia María de Maeztu", funded by the AEI (CEX2018-000792-M), Howard Hughes International Early Career, NIH 1R01HG010898-01A1 and Secretaria d'Universitats i Recerca and CERCA Programme del Departament d'Economia i Coneixement de la Generalitat de Catalunya (GRC 2017 SGR 880). FES is supported by the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie (grant agreement No. 801505).
• dc.format.mimetype application/pdf
• dc.identifier.citation Janiak MC, Silva FE, Beck RMD, de Vries D, Kuderna LFK, Torosin NS, Melin AD, Marquès-Bonet T, Goodhead IB, Messias M, da Silva MNF, Sampaio I, Farias IP, Rossi R, de Melo FR, Valsecchi J, Hrbek T, Boubli JP. Two hundred and five newly assembled mitogenomes provide mixed evidence for rivers as drivers of speciation for Amazonian primates. Mol Ecol. 2022 Jul;31(14):3888-902. DOI: 10.1111/mec.16554
• dc.identifier.doi http://dx.doi.org/10.1111/mec.16554
• dc.identifier.issn 0962-1083
• dc.identifier.uri http://hdl.handle.net/10230/53686
• dc.language.iso eng
• dc.publisher Wiley
• dc.relation.ispartof Mol Ecol. 2022 Jul;31(14):3888-902
• dc.relation.projectID info:eu-repo/grantAgreement/EC/H2020/864203
• dc.relation.projectID info:eu-repo/grantAgreement/ES/2PE/BFU2017-86471-P
• dc.relation.projectID info:eu-repo/grantAgreement/EC/H2020/801505
• dc.rights © 2022 The Authors. Molecular Ecology published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
• dc.rights.accessRights info:eu-repo/semantics/openAccess
• dc.rights.uri http://creativecommons.org/licenses/by/4.0/
• dc.subject.keyword South American primates
• dc.subject.keyword Mitochondrial DNA
• dc.subject.keyword Molecular phylogenetics
• dc.subject.keyword Platyrrhines
• dc.subject.keyword Riverine barrier hypothesis
• dc.title Two hundred and five newly assembled mitogenomes provide mixed evidence for rivers as drivers of speciation for Amazonian primates
• dc.type info:eu-repo/semantics/article
• dc.type.version info:eu-repo/semantics/publishedVersion