ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
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- dc.contributor.author Huerta Cepas, Jaimeca
- dc.contributor.author Serra, Françoisca
- dc.contributor.author Bork, Peerca
- dc.date.accessioned 2017-04-26T10:07:14Z
- dc.date.available 2017-04-26T10:07:14Z
- dc.date.issued 2016
- dc.description.abstract The Environment for Tree Exploration (ETE) is a computational framework that simplifies the reconstruction, analysis, and visualization of phylogenetic trees and multiple sequence alignments. Here, we present ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based phylogenies using a single command, (ii) testing and visualizing evolutionary models, (iii) calculating distances between trees of different size or including duplications, and (iv) providing seamless integration with the NCBI taxonomy database. ETE is freely available at http://etetoolkit.org
- dc.format.mimetype application/pdfca
- dc.identifier.citation Huerta Cepas J, Serra F, Bork P. ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data. Molecular Biology and Evolution. 2016;33(6):1635-8. DOI: 10.1093/molbev/msw046
- dc.identifier.doi http://dx.doi.org/10.1093/molbev/msw046
- dc.identifier.issn 0737-4038
- dc.identifier.uri http://hdl.handle.net/10230/30907
- dc.language.iso eng
- dc.publisher Oxford University Pressca
- dc.relation.ispartof Molecular Biology and Evolution. 2016;33(6):1635-8
- dc.rights © Oxford University Press. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/ ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
- dc.rights.accessRights info:eu-repo/semantics/openAccess
- dc.rights.uri http://creativecommons.org/licenses/by/4.0/
- dc.subject.keyword Phylogenomics
- dc.subject.keyword Tree visualization
- dc.subject.keyword Tree comparison
- dc.subject.keyword NCBI taxonomy
- dc.subject.keyword Hypothesis testing
- dc.subject.keyword Phylogenetics
- dc.title ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Dataca
- dc.type info:eu-repo/semantics/article
- dc.type.version info:eu-repo/semantics/publishedVersion