The BioGenome Portal: a web-based platform for biodiversity genomics data management

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  • dc.contributor.author Righi, Emilio
  • dc.contributor.author Guigó Serra, Roderic
  • dc.date.accessioned 2025-05-12T06:50:05Z
  • dc.date.available 2025-05-12T06:50:05Z
  • dc.date.issued 2025
  • dc.description.abstract Biodiversity genomics projects are underway with the aim of sequencing the genomes of all eukaryotic species on Earth. Here we describe the BioGenome Portal, a web-based application to facilitate organization and access to the data produced by biodiversity genomics projects. The portal integrates user-generated data with data deposited in public repositories. The portal generates sequence status reports that can be eventually ingested by designated metadata tracking systems, facilitating the coordination task of these systems. The portal is open-source and fully customizable. It can be deployed at any site with minimum effort, contributing to the democratization of biodiversity genomics projects. We illustrate the features of the BioGenome Portal through a number of specific instances. One such instance is being used as the reference portal for the Catalan Initiative for the Earth Biogenome Project, a regional project aiming to sequencing the genomes of the species of the Catalan linguistic area.
  • dc.format.mimetype application/pdf
  • dc.identifier.citation Righi E, Guigó R. The BioGenome Portal: a web-based platform for biodiversity genomics data management. NAR Genom Bioinform. 2025 Mar 22;7(1):lqaf020. DOI: 10.1093/nargab/lqaf020
  • dc.identifier.doi http://dx.doi.org/10.1093/nargab/lqaf020
  • dc.identifier.issn 2631-9268
  • dc.identifier.uri http://hdl.handle.net/10230/70346
  • dc.language.iso eng
  • dc.publisher Oxford University Press
  • dc.relation.ispartof NAR Genom Bioinform. 2025 Mar 22;7(1):lqaf020
  • dc.rights © The Author(s) 2025. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
  • dc.rights.accessRights info:eu-repo/semantics/openAccess
  • dc.rights.uri http://creativecommons.org/licenses/by/4.0/
  • dc.subject.other Genòmica
  • dc.title The BioGenome Portal: a web-based platform for biodiversity genomics data management
  • dc.type info:eu-repo/semantics/article
  • dc.type.version info:eu-repo/semantics/publishedVersion

Col·leccions

Articles (Departament de Medicina i Ciències de la Vida)
Articles (Center for Genomic Regulation (CRG))