MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets

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• dc.contributor.author Choi, Meena
• dc.contributor.author Chiva, Cristina
• dc.contributor.author Sabidó Aguadé, Eduard, 1981-
• dc.contributor.author Vitek, Olga
• dc.date.accessioned 2020-10-06T05:59:35Z
• dc.date.issued 2020
• dc.description.abstract MassIVE.quant is a repository infrastructure and data resource for reproducible quantitative mass spectrometry-based proteomics, which is compatible with all mass spectrometry data acquisition types and computational analysis tools. A branch structure enables MassIVE.quant to systematically store raw experimental data, metadata of the experimental design, scripts of the quantitative analysis workflow, intermediate input and output files, as well as alternative reanalyses of the same dataset.
• dc.description.sponsorship This work was supported in part by NSF CAREER award no. DBI-1054826, grant no. NSF DBI-1759736 and the Chan-Zuckerberg foundation to O.V., grant no. NIH-NLM 1R01LM013115 to N.B. and O.V., NSF award no. ABI 1759980, NIH award nos. P41GM103484 and R24GM127667 to N.B. and the Personalized Health and Related Technologies (grant no. PHRT 0-21411-18) strategic focus area of ETH to B.W. The CRG/UPF Proteomics Unit is part of the Spanish Infrastructure for Omics Technologies (ICTS OmicsTech) and it is a member of the ProteoRed PRB3 consortium that is supported by grant no. PT17/0019 of the PE I+D+i 2013–2016 from the Instituto de Salud Carlos III (ISCIII) and ERDF. We acknowledge support from the Spanish Ministry of Science, Innovation and Universities, ‘Centro de Excelencia Severo Ochoa 2013–2017’, SEV-2012–0208 and Secretaria d’Universitats i Recerca del Departament d’Economia i Coneixement de la Generalitat de Catalunya (grant no. 2017SGR595). This project has received funding from the European Union’s Horizon 2020 research and innovation program under grant agreement no. 823839 (EPIC-XS). Y.P.-R. acknowledges the Wellcome Trust (grant no. 208391/Z/17/Z).
• dc.format.mimetype application/pdf
• dc.identifier.citation Choi M, Carver J, Chiva C, Tzouros M, Huang T, Tsai TH et al. MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. Nat Methods. 2020; 17(10):981-4. DOI: 10.1038/s41592-020-0955-0
• dc.identifier.doi http://dx.doi.org/10.1038/s41592-020-0955-0
• dc.identifier.issn 1548-7091
• dc.identifier.uri http://hdl.handle.net/10230/45397
• dc.language.iso eng
• dc.publisher Nature Research
• dc.relation.ispartof Nat Methods. 2020; 17(10):981-4
• dc.relation.projectID info:eu-repo/grantAgreement/EC/H2020/823839
• dc.rights © Springer Nature Publishing AG. Choi M, Carver J, Chiva C, Tzouros M, Huang T, Tsai TH et al. MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. Nat Methods. 2020; 17(10):981-4. DOI: 10.1038/s41592-020-0955-0 [http://dx.doi.org/10.1038/s41592-020-0955-0]
• dc.rights.accessRights info:eu-repo/semantics/openAccess
• dc.subject.keyword Data publication and archiving
• dc.subject.keyword Software
• dc.title MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets
• dc.type info:eu-repo/semantics/article
• dc.type.version info:eu-repo/semantics/acceptedVersion