FoldX 5.0: working with RNA, small molecules and a new graphical interface

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dc.contributor.authorDelgado Blanco, Javier
dc.contributor.authorRadusky, Leandro
dc.contributor.authorCianferoni, Damiano
dc.contributor.authorSerrano Pubull, Luis, 1982-
dc.date.accessioned2020-03-17T07:29:08Z
dc.date.available2020-03-17T07:29:08Z
dc.date.issued2019
dc.description.abstractSUMMARY: A new version of FoldX, whose main new features allows running classic FoldX commands on structures containing RNA molecules and includes a module that allows parametrization of ligands or small molecules (ParamX) that were not previously recognized in old versions, has been released. An extended FoldX graphical user interface has also being developed (available as a python plugin for the YASARA molecular viewer) allowing user-friendly parametrization of new custom user molecules encoded using JSON format. AVAILABILITY AND IMPLEMENTATION: http://foldxsuite.crg.eu/.
dc.description.sponsorshipWe acknowledge funds from the Spanish Ministry of Economy, Industry and Competitiveness (MEIC) Plan Nacional grant number BFU2015-63571-P, Centro de Excelencia Severo Ochoa, and the CERCA Programme/Generalitat de Catalunya.
dc.format.mimetypeapplication/pdf
dc.identifier.citationDelgado J, Radusky LG, Cianferoni D, Serrano L. FoldX 5.0: working with RNA, small molecules and a new graphical interface. Bioinformatics. 2019; 35(20):4168-9. DOI: 10.1093/bioinformatics/btz184
dc.identifier.doihttp://dx.doi.org/10.1093/bioinformatics/btz184
dc.identifier.issn1367-4803
dc.identifier.urihttp://hdl.handle.net/10230/43904
dc.language.isoeng
dc.publisherOxford University Press
dc.relation.ispartofBioinformatics. 2019; 35(20):4168-9
dc.relation.projectIDinfo:eu-repo/grantAgreement/ES/1PE/BFU2015-63571-P
dc.rights© The Author(s) 2019. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
dc.rights.accessRightsinfo:eu-repo/semantics/openAccess
dc.rights.urihttp://creativecommons.org/licenses/by-nc/4.0/
dc.titleFoldX 5.0: working with RNA, small molecules and a new graphical interface
dc.typeinfo:eu-repo/semantics/article
dc.type.versioninfo:eu-repo/semantics/publishedVersion

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