FoldX 5.0: working with RNA, small molecules and a new graphical interface

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  • dc.contributor.author Delgado Blanco, Javier
  • dc.contributor.author Radusky, Leandro
  • dc.contributor.author Cianferoni, Damiano
  • dc.contributor.author Serrano Pubull, Luis, 1982-
  • dc.date.accessioned 2020-03-17T07:29:08Z
  • dc.date.available 2020-03-17T07:29:08Z
  • dc.date.issued 2019
  • dc.description.abstract SUMMARY: A new version of FoldX, whose main new features allows running classic FoldX commands on structures containing RNA molecules and includes a module that allows parametrization of ligands or small molecules (ParamX) that were not previously recognized in old versions, has been released. An extended FoldX graphical user interface has also being developed (available as a python plugin for the YASARA molecular viewer) allowing user-friendly parametrization of new custom user molecules encoded using JSON format. AVAILABILITY AND IMPLEMENTATION: http://foldxsuite.crg.eu/.
  • dc.description.sponsorship We acknowledge funds from the Spanish Ministry of Economy, Industry and Competitiveness (MEIC) Plan Nacional grant number BFU2015-63571-P, Centro de Excelencia Severo Ochoa, and the CERCA Programme/Generalitat de Catalunya.
  • dc.format.mimetype application/pdf
  • dc.identifier.citation Delgado J, Radusky LG, Cianferoni D, Serrano L. FoldX 5.0: working with RNA, small molecules and a new graphical interface. Bioinformatics. 2019; 35(20):4168-9. DOI: 10.1093/bioinformatics/btz184
  • dc.identifier.doi http://dx.doi.org/10.1093/bioinformatics/btz184
  • dc.identifier.issn 1367-4803
  • dc.identifier.uri http://hdl.handle.net/10230/43904
  • dc.language.iso eng
  • dc.publisher Oxford University Press
  • dc.relation.ispartof Bioinformatics. 2019; 35(20):4168-9
  • dc.relation.projectID info:eu-repo/grantAgreement/ES/1PE/BFU2015-63571-P
  • dc.rights © The Author(s) 2019. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
  • dc.rights.accessRights info:eu-repo/semantics/openAccess
  • dc.rights.uri http://creativecommons.org/licenses/by-nc/4.0/
  • dc.title FoldX 5.0: working with RNA, small molecules and a new graphical interface
  • dc.type info:eu-repo/semantics/article
  • dc.type.version info:eu-repo/semantics/publishedVersion

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