ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
Mostra el registre complet Registre parcial de l'ítem
- dc.contributor.author Garrido Martín, Diego, 1992-
- dc.contributor.author Palumbo, Emilio
- dc.contributor.author Guigó Serra, Roderic
- dc.contributor.author Breschi, Alessandra, 1988-
- dc.date.accessioned 2019-04-29T07:56:55Z
- dc.date.available 2019-04-29T07:56:55Z
- dc.date.issued 2018
- dc.description.abstract We present ggsashimi, a command-line tool for the visualization of splicing events across multiple samples. Given a specified genomic region, ggsashimi creates sashimi plots for individual RNA-seq experiments as well as aggregated plots for groups of experiments, a feature unique to this software. Compared to the existing versions of programs generating sashimi plots, it uses popular bioinformatics file formats, it is annotation-independent, and allows the visualization of splicing events even for large genomic regions by scaling down the genomic segments between splice sites. ggsashimi is freely available at https://github.com/guigolab/ggsashimi. It is implemented in python, and internally generates R code for plotting.
- dc.format.mimetype application/pdf
- dc.identifier.citation Garrido-Martín D, Palumbo E, Guigó R, Breschi A. ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization. PLoS Comput Biol. 2018;14(8):e1006360. DOI: 10.1371/journal.pcbi.1006360
- dc.identifier.doi http://dx.doi.org/10.1371/journal.pcbi.1006360
- dc.identifier.issn 1553-734X
- dc.identifier.uri http://hdl.handle.net/10230/37148
- dc.language.iso eng
- dc.publisher Public Library of Science (PLoS)
- dc.relation.ispartof PLOS Computational Biology. 2018;14(8):e1006360
- dc.rights © 2018 Garrido-Martín et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
- dc.rights.accessRights info:eu-repo/semantics/openAccess
- dc.rights.uri http://creativecommons.org/licenses/by/4.0/
- dc.title ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
- dc.type info:eu-repo/semantics/article
- dc.type.version info:eu-repo/semantics/publishedVersion