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Neurodegenerative diseases: quantitative predictions of protein-RNA interactions

Cirillo, Davide; Agostini, Federico, 1985-; Klus, Petr, 1985-; Marchese, Domenica, 1986-; Rodríguez, Silvia; Bolognesi, Benedetta; Tartaglia, Gian Gaetano (Cold Spring Harbor Laboratory Press (CSHL Press), 2013)
X-inactivation: quantitative predictions of protein interactions in the Xist network

Agostini, Federico, 1985-; Cirillo, Davide; Bolognesi, Benedetta; Tartaglia, Gian Gaetano (Oxford University Press, 2013)
The ctenophore genome and the evolutionary origins of neural systems

Moroz, Leonid L.; Povolotskaya, Inna, 1986-; Derelle, Romain; Kondrashov, Fyodor A., 1979-; Kohn, Andrea B. (Nature Publishing Group, 2014)
Improved definition of the mouse transcriptome via targeted RNA sequencing

Bussotti, Giovanni, 1983-; Leonardi, Tommaso; Clark, Michael B.; Mercer, Tim R.; Crawford, Joanna; Malquori, Lorenzo; Notredame, Cedric; Dinger, Marcel E.; Mattick, John S.; Enright, Anton J. (Cold Spring Harbor Laboratory Press (CSHL Press), 2016)
Regulation of FAS exon definition and apoptosis by the ewing sarcoma protein

Paronetto, Maria Paola; Bernardis, Isabella; Volpe, Elisabetta; Bechara, Elias; Sebestyén, Endre; Eyras Jiménez, Eduardo; Valcárcel, J. (Juan) (Elsevier, 2014)
Evidence for transcript networks composed of chimeric RNAs in human cells

Djebali, Sarah; Lagarde, Julien; Lacroix, Vincent; Foissac, Sylvain; Ribeca, Paolo; Martin, David; Guigó Serra, Roderic; Gingeras, Thomas R. (Public Library of Science (PLoS), 2012)
Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein

Zanzoni, Andreas; Marchese, Domenica, 1986-; Agostini, Federico, 1985-; Bolognesi, Benedetta; Cirillo, Davide; Botta-Orfila, Maria; Livi, Carmen Maria; Rodriguez-Mulero, Silvia; Tartaglia, Gian Gaetano (Oxford University Press, 2013)
Modelling and simulating generic RNA-Seq experiments with the flux simulator

Griebel, Thasso; Zacher, Benedikt; Ribeca, Paolo; Raineri, Emanuele; Lacroix, Vincent; Guigó Serra, Roderic; Sammeth, Michael (Oxford University Press, 2012)
Intron-centric estimation of alternative splicing from RNA-seq data

Pervouchine, Dmitri D.; Knowles, David G.; Guigó Serra, Roderic (Oxford University Press, 2013)
Expression divergence of chemosensory genes between drosophila sechellia and its sibling species and its implications for host shift

Shiao, Meng-Shin; Chang, Jia-Ming, 1978-; Fan, Wen-Lang; Jade Lu, Mei-Yeh; Notredame, Cedric; Fang, Shu; Kondo, Rumi; Li, Wen-Hsiung (Oxford University Press, 2015)