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Protein-peptide complex prediction through fragment interaction patterns

Verschueren, Erik; Vanhee, Peter; Rousseau, Frédéric; Schymkowitz, Joost; Serrano Pubull, Luis, 1982- (Elsevier, 2013)
Human epidermal stem cell function is regulated by circadian oscillations

Janich, Peggy, 1981-; Toufighi, Kiana, 1980-; Solanas, Guiomar; Luis, Nuno Miguel, 1982-; Minkwitz, Susann; Serrano Pubull, Luis, 1982-; Lehner, Ben, 1978-; Aznar Benitah, Salvador (Elsevier, 2013)
Evidence for transcript networks composed of chimeric RNAs in human cells

Djebali, Sarah; Lagarde, Julien; Lacroix, Vincent; Foissac, Sylvain; Ribeca, Paolo; Martin, David; Guigó Serra, Roderic; Gingeras, Thomas R. (Public Library of Science (PLoS), 2012)
Kinetics in signal transduction pathways involving promiscuous oligomerizing receptors can be determined by receptor specificity: apoptosis induction by TRAIL

Szegezdi, Eva; van der Sloot, Almer M.; Mahalingam, Devalingam; O'Leary, Lynda; Cool, Robbert H.; Muñoz, Inés G.; Montoya, Guillermo; Quax, Wim J.; Jong, Steven M. de, 1962-; Samali, Afshin; Serrano Pubull, Luis, 1982- (American Society for Biochemistry and Molecular Biology (ASBMB), 2012)
Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus

Marcet Houben, Marina; Ballester, Ana Rosa; de la Fuente, Beatriz; Harries, Eleonora; Marcos del Águila, Josep, 1971-; González Candelas, Luis; Gabaldón Estevan, Juan Antonio, 1973- (BioMed Central, 2012)
Cell-of-origin-specific 3D genome structure acquired during somatic cell reprogramming

Krijger, Peter Hugo Lodewijk; Di Stefano, Bruno, 1984-; de Wit, Elzo; Limone, Francesco; van Oevelen, Chris; de Laat, Wouter; Graf, T. (Thomas) (Elsevier, 2016)
A highly expressed miR-101 isomiR is a functional silencing small RNA

Llorens, Franc; Bañez Coronel, Mónica; Pantano Rubiño, Lorena, 1982-; del Río, José Antonio; Ferrer, Isidre; Estivill, Xavier, 1955-; Martí, Eulàlia (BioMed Central, 2013)
Grape RNA-Seq analysis pipeline environment

Knowles, David G.; Röder, Maik; Merkel, Angelika; Guigó Serra, Roderic (Oxford University Press, 2013)
Intron-centric estimation of alternative splicing from RNA-seq data

Pervouchine, Dmitri D.; Knowles, David G.; Guigó Serra, Roderic (Oxford University Press, 2013)
Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis

Llorens, Franc; Hummel, Manuela; Pastor Ruiz, Javier; Ferrer Salvador, Anna; Pluvinet, Raquel; Vivancos Prellezo, Ana; Castillo Andreo, Esther; Iraola Guzman, Susana; Mosquera Miguel, Ana; González-Roca, Eva; Lozano, Juan José; Ingham, Matthew; Dohm, Juliane C.; Noguera, Marc; Kofler, Robert; Río, Jose Antonio del; Bayés, Mònica; Himmelbauer, Heinz; Sumoy Van Dyck, Lauro (BioMed Central, 2011)