Welcome to the UPF Digital Repository

Browsing by Author "Naranjo Ortiz, Miguel Ángel, 1989-"

Browsing by Author "Naranjo Ortiz, Miguel Ángel, 1989-"

Sort by: Order: Results:

  • Evolutionary genomics of yeast pathogens in the Saccharomycotina
    Gabaldón Estevan, Juan Antonio, 1973-; Naranjo Ortiz, Miguel Ángel, 1989-; Marcet Houben, Marina (Oxford University Press, 2016)
    Saccharomycotina comprises a diverse group of yeasts that includes numerous species of industrial or clinical relevance. Opportunistic pathogens within this clade are often assigned to the genus Candida but belong to ...
  • Fungal evolution: cellular, genomic and metabolic complexity
    Naranjo Ortiz, Miguel Ángel, 1989-; Gabaldón Estevan, Juan Antonio, 1973- (Wiley, 2020)
    The question of how phenotypic and genomic complexity are inter-related and how they are shaped through evolution is a central question in biology that historically has been approached from the perspective of animals and ...
  • Fungal evolution: diversity, taxonomy and phylogeny of the Fungi
    Naranjo Ortiz, Miguel Ángel, 1989-; Gabaldón Estevan, Juan Antonio, 1973- (Wiley, 2019)
    The fungal kingdom comprises a hyperdiverse clade of heterotrophic eukaryotes characterized by the presence of a chitinous cell wall, the loss of phagotrophic capabilities and cell organizations that range from completely ...
  • Fungal evolution: major ecological adaptations and evolutionary transitions
    Naranjo Ortiz, Miguel Ángel, 1989-; Gabaldón Estevan, Juan Antonio, 1973- (Wiley, 2019)
    Fungi are a highly diverse group of heterotrophic eukaryotes characterized by the absence of phagotrophy and the presence of a chitinous cell wall. While unicellular fungi are far from rare, part of the evolutionary success ...
  • Genome sequence of the brown rot fungal pathogen Monilinia laxa
    Naranjo Ortiz, Miguel Ángel, 1989-; Rodríguez-Píres, Silvia; Torres, Rosario; De Cal, Antonieta; Usall, Josep; Gabaldón Estevan, Juan Antonio, 1973- (American Society for Microbiology, 2018)
    Monilinia laxa (phylum Ascomycota) is a plant pathogen responsible for the brown rot blossom blight disease in stone fruit trees of the Rosaceae family, such as apricots. We report here the genome sequence of strain 8L of ...
  • Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other nonstandard architectures in genome assemblies
    Naranjo Ortiz, Miguel Ángel, 1989-; Molina, Manuel; Fuentes Palacios, Diego; Mixão, Verónica; Gabaldón Estevan, Juan Antonio, 1973- (Oxford University Press, 2022)
    Background: Recent technological developments have made genome sequencing and assembly highly accessible and widely used. However, the presence in sequenced organisms of certain genomic features such as high heterozygosity, ...
  • Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
    Gerdol, Marco; Cruz, Fernando; Gómez-Garrido, Jèssica; Vlasova, Anna; Naranjo Ortiz, Miguel Ángel, 1989-; Corvelo, André; Frias, Leonor; Gut, Marta; Gabaldón Estevan, Juan Antonio, 1973-; Alioto, Tyler; Figueras, Antonio (BioMed Central, 2020)
    Background: The Mediterranean mussel Mytilus galloprovincialis is an ecologically and economically relevant edible marine bivalve, highly invasive and resilient to biotic and abiotic stressors causing recurrent massive ...
  • Non-vertical genomics in fungal evolution
    Naranjo Ortiz, Miguel Ángel, 1989- (Universitat Pompeu Fabra, 2019-01-18)
    Non-vertical genomic events, which include horizontal gene transfer (HGT) and hybridization, are widely studied evolutionary processes in certain groups. HGT is particularly well known for prokaryotic organisms, while ...