Hartasánchez Frenk, Diego Andrés, 1982-Brasó-Vives, Marina, 1990-Fuentes-Díaz, JuanmaVallés-Codina, OriolNavarro i Cuartiellas, Arcadi, 1969-2017-05-222017-05-222016Hartasánchez DA, Brasó-Vives M, Fuentes-Díaz J, Vallès-Codina O1, Navarro A. SeDuS: segmental duplication simulator. Bioinformatics. 2016 Jan 1;32(1):148-50. DOI: 10.1093/bioinformatics/btv4811367-4803http://hdl.handle.net/10230/32140SUMMARY: SeDuS is the first flexible and user-friendly forward-in-time simulator of patterns of molecular evolution within segmental duplications undergoing interlocus gene conversion and crossover. SeDuS introduces known features of interlocus gene conversion such as biased directionality and dependence on local sequence identity. Additionally, it includes aspects such as different selective pressures acting upon copy number and flexible crossover distributions. A graphical user interface allows fast fine-tuning of relevant parameters and straightforward real-time analysis of the evolution of duplicates. AVAILABILITY AND IMPLEMENTATION: SeDuS is implemented in C++ and can be run via command line or through a graphical user interface developed using Qt C++. Source code and binary executables for Linux, OS X and Windows are freely available at www.biologiaevolutiva.org/sedus/. A tutorial with a detailed description of implementation, parameters and output files is available online.application/pdfeng© Oxford University Press. This is a pre-copy-editing, author-produced PDF of an article accepted for publication in Bioinformatics following peer review. The definitive publisher-authenticated version Hartasánchez DA, Brasó-Vives M, Fuentes-Díaz J, Vallès-Codina O1, Navarro A. SeDuS: segmental duplication simulator. Bioinformatics. 2016 Jan 1; 32(1): 148-50 is available online at: http://dx.doi.org/10.1093/bioinformatics/btv481Àcids nucleicsSimulació per ordinadorEvolució molecularSeDuS: segmental duplication simulatorinfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1093/bioinformatics/btv481info:eu-repo/semantics/openAccess