Sanvicente-García, MartaGarcía Valiente, AlbertJouide, SocaynaJaraba-Wallace, JessicaBautista, EricEscobosa Olmo, MarcSánchez-Mejías, AvenciaGüell Cargol, Marc, 1982-2023-10-062023-10-062023Sanvicente-García M, García-Valiente A, Jouide S, Jaraba-Wallace J, Bautista E, Escobosa M, Sánchez-Mejías A, Güell M. CRISPR-Analytics (CRISPR-A): A platform for precise analytics and simulations for gene editing. PLoS Comput Biol. 2023 May 30;19(5):e1011137. DOI: 10.1371/journal.pcbi.10111371553-734Xhttp://hdl.handle.net/10230/58054Gene editing characterization with currently available tools does not always give precise relative proportions among the different types of gene edits present in an edited bulk of cells. We have developed CRISPR-Analytics, CRISPR-A, which is a comprehensive and versatile genome editing web application tool and a nextflow pipeline to give support to gene editing experimental design and analysis. CRISPR-A provides a robust gene editing analysis pipeline composed of data analysis tools and simulation. It achieves higher accuracy than current tools and expands the functionality. The analysis includes mock-based noise correction, spike-in calibrated amplification bias reduction, and advanced interactive graphics. This expanded robustness makes this tool ideal for analyzing highly sensitive cases such as clinical samples or experiments with low editing efficiencies. It also provides an assessment of experimental design through the simulation of gene editing results. Therefore, CRISPR-A is ideal to support multiple kinds of experiments such as double-stranded DNA break-based engineering, base editing (BE), primer editing (PE), and homology-directed repair (HDR), without the need of specifying the used experimental approach.application/pdfeng© 2023 Sanvicente-García et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.info:eu-repo/semantics/articlehttp://dx.doi.org/10.1371/journal.pcbi.1011137CRISPRSequence alignmentGenomicsNucleotidesNucleotide sequencingSimulation and modelingMicrohomology-mediated end joiningPolymerase chain reactioninfo:eu-repo/semantics/openAccess