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RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory.

Garcia-Martin, Juan Antonio; Bayegan, Amir H.; Dotu, Ivan; Clote, Peter (BioMed Central, 2016)
The quest for a message: budding yeast, a model organism to study the control of pre-mRNA splicing

Meyer, Markus; Vilardell, Josep (Oxford University Press, 2009)
Neurodegenerative diseases: quantitative predictions of protein-RNA interactions

Cirillo, Davide; Agostini, Federico, 1985-; Klus, Petr, 1985-; Marchese, Domenica, 1986-; Rodríguez, Silvia; Bolognesi, Benedetta; Tartaglia, Gian Gaetano (Cold Spring Harbor Laboratory Press (CSHL Press), 2013)
X-inactivation: quantitative predictions of protein interactions in the Xist network

Agostini, Federico, 1985-; Cirillo, Davide; Bolognesi, Benedetta; Tartaglia, Gian Gaetano (Oxford University Press, 2013)
Modification of y-secretase by nitrosative stress links neuronal ageing to sporadic Alzheimer's disease

Guix Ràfols, Francesc Xavier; Wahle, Tina; Vennekens, Kristel; Snellinx, An; Chávez Gutiérrez, Lucía; Ill-Raga, Gerard, 1982-; Ramos Fernández, Eva, 1984-; Guardia Laguarta, Cristina; Lleó, Alberto; Arimon, Muriel; Berezovska, Oksana; Muñoz López, Francisco José, 1964-; Dotti, Carlos G.; De Strooper, Bart (Wiley-VCH Verlag, 2012)
Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression

Shen, Manli; Eyras Jiménez, Eduardo; Wu, Jie; Josiah, Serene; Rederstorff, Mathieu; Zhang, Michael Q; Stamm, Stefan (Oxford University Press, 2011)
Identification of genetic variants associated with alternative splicing using sQTLseekeR

Monlong, Jean; Calvo, Miquel; Ferreira, Pedro G.; Guigó Serra, Roderic (Nature Publishing Group, 2014)
Assessing the hodgepodge of non-mapped reads in bacterial transcriptomes: real or artifactual RNA chimeras?

Lloréns Rico, Verónica, 1989-; Serrano Pubull, Luis, 1982-; Lluch-Senar, Maria 1982- (BioMed Central, 2014)
RNA structure drives interaction with proteins

Sanchez de Groot, Natalia; Armaos, Alexandros, 1989-; Graña-Montes, Ricardo; Alriquet, Marion; Calloni, Giulia; Vabulas, R. Martin; Tartaglia, Gian Gaetano (Nature Research, 2019)
Systematic analysis of splice-site-creating mutations in cancer

Jayasinghe, Reyka G.; Eyras Jiménez, Eduardo; Ding, Li; The Cancer Genome Atlas (TCGA) Research Network (Elsevier, 2018)