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Prominent use of distal 5’ transcription start sites and discovery of a large number of additional exons in ENCODE regions

Denoeud, France; Kapranov, Philipp; Ucla, Catherine; Frankish, Adam; Castelo Valdueza, Robert; Drenkow, Jorg; Lagarde, Julien; Alioto, Tyler; Manzano, Caroline; Chrast, Jacqueline; Dike, Sujit; Wyss, Carine; Henrichsen, Charlotte N.; Holroyd, Nancy; Dickson, Mark C.; Taylor, Ruth; Hance, Zahra; Foissac, Sylvain; Myers, Richard M.; Rogers, Jane; Hubbard, Tim J.; Harrow, Jennifer; Guigó Serra, Roderic; Gingeras, Thomas R.; Antonarakis, Stylianos E.; Reymond, Alexandre (Cold Spring Harbor Laboratory Press-CSHL Press, 2007)
Tandem chimeric transcription as a means to increase protein diversity in the human genome

Parra Farré, Genís; Reymond, Alexandre; Dabbouseh, Noura; Dermitzakis, Emmanuouil T.; Thomson, Timothy M.; Antonarakis, Stylianos E.; Guigó Serra, Roderic (Cold Spring Harbor Laboratory Press-CSHL Press, 2006)
La biologia computacional

Guigó Serra, Roderic (Institut d'Estudis Catalans, 2000)
Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events

Bosch Pagès, Nina; Cáceres Aguilar, Mario; Cardone, Maria Francesca; Carreras, Anna; Ballana Guix, Ester; Rocchi, Mariano; Armengol i Dulcet, Lluís; Estivill, Xavier, 1955- (Oxford University Press, 2007)
Estimating the rate of irreversibility in protein evolution

Söylemez, Onuralp, 1985-; Kondrashov, Fyodor A., 1979- (Oxford University Press, 2012)
Translation of neutrally evolving peptides provides a basis for de novo gene evolution

Ruiz-Orera, Jorge; Verdaguer-Grau, Pol; Villanueva Cañas, José Luis, 1984-; Messeguer, Xavier; Albà Soler, Mar (Springer, 2018)
VCF2Networks: applying genotype networks to single-nucleotide variants data

Dall'Olio, Giovanni Marco, 1983-; Vahdati, Ali R.; Bertranpetit, Jaume, 1952-; Wagner, Andreas; Laayouni, Hafid, 1968- (Oxford University Press, 2015)
Fast computation and applications of genome mappability

Derrien, Thomas; Estellé, Jordi; Marco Sola, Santiago; Knowles, David G.; Raineri, Emanuele; Guigó Serra, Roderic; Ribeca, Paolo (Public Library of Science (PLoS), 2012)
High trans-ethnic replicability of GWAS results implies common causal variants

Marigorta, Urko M.; Navarro i Cuartiellas, Arcadi, 1969- (Public Library of Science (PLoS), 2013)
Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome

Howald, Cédric; Tanzer, Andrea; Chrast, Jacqueline; Kokocinski, Felix; Derrien, Thomas; Walters, Nathalie; González, José M.; Frankish, Adam; Aken, Bronwen; Hourlier, Thibaut; Vogel, Jan-Hinnerk; White, Simon; Searle, Stephen; Harrow, Jennifer; Hubbard, Tim J.; Guigó Serra, Roderic; Reymond, Alexandre (Cold Spring Harbor Laboratory Press (CSHL Press), 2012)