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Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

Ferreira, Pedro G.; González-Pérez, Abel; Knowles, David G.; Monlong, Jean; Johnson, Rory; Djebali, Sarah; Papasaikas, Panagiotis; Tamborero Noguera, David; Gouin, Anaïs; López Bigas, Núria; Guigó Serra, Roderic (Cold Spring Harbor Laboratory Press (CSHL Press), 2014)
A Landscape of Pharmacogenomic Interactions in Cancer.

Iorio, Francesco Iorio; Tamborero Noguera, David; López Bigas, Núria; Esteller, Manel; Garnett, Mathew J. (Elsevier, 2016)
Genomic insights into the origin of farming in the ancient Near East

Lazaridis, Iosif; Comas, David, 1969-; Reich, David (Nature Publishing Group, 2016)
Integration Analysis of Three Omics Data Using Penalized Regression Methods: An Application to Bladder Cancer.

Pineda, Silvia; Real, Francisco X.; Kogevinas, Manolis; Carrato, Alfredo; Chanock, Stephen J.; Malats i Riera, Núria; Van Steen, Kristel (Public Library of Science, 2015)
Evolutionary and functional patterns of shared gene neighbourhood in fungi

Marcet Houben, Marina; Gabaldón Estevan, Juan Antonio, 1973- (Nature Research, 2019)
Hierarchical boosting: a machine-learning framework to detect and classify hard selective sweeps in human populations

Pybus Oliveras, Marc, 1985-; Luisi, Pierre, 1985-; Dall'Olio, Giovanni Marco, 1983-; Uzkudun, Manu; Laayouni, Hafid, 1968-; Bertranpetit, Jaume, 1952-; Engelken, Johannes (Oxford University Press, 2015)
The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana

Wijnker, Erik; Velikkakam, James Geo; Ding, Jia; Becker, Frank; Klasen, Jonas R.; Rawat, Vimal; Rowan, Beth A.; Jong, Daniël F. de; Snoo, C. Bastiaan de; Zapata Ortiz, Luis, 1985-; Huettel, Bruno; Jong, Hans de; Ossowski, Stephan; Weigel, Detlef; Koornneef, Maarten; Keurentjes, Joost JB; Schneeberger, Korbinian (eLife, 2013)
Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes

Leiserson, Mark D.M.; Vandin, Fabio; Wu, Hsin-Ta; Dobson, Jason R.; Eldridge, Jonathan V.; Thomas, Jacob L.; Papoutsaki, Alexandra; Kim, Younhun; Niu, Beifang; McLellan, Michael; Lawrence, Michael S.; Gonzalez-Perez, Abel; Tamborero Noguera, David; Cheng, Yuwei; Ryslik, Gregory A.; López Bigas, Núria; Getz, Gad; Ding, Li; Raphael, Benjamin J. (Nature Research, 2015)
Differential DNA mismatch repair underlies mutation rate variation across the human genome

Supek, Fran; Lehner, Ben, 1978- (Nature Publishing Group, 2015)
Use of ChIP-Seq data for the design of a multiple promoter-alignment method

Erb, Ionas; González-Vallinas Rostes, Juan, 1983-; Bussotti, Giovanni, 1983-; Blanco, Enrique; Eyras Jiménez, Eduardo; Notredame, Cedric (Oxford University Press, 2012)