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The genome of the generalist plant pathogen fusarium avenaceum is enriched with genes involved in redox, signaling and secondary metabolism

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dc.contributor.author Lysøe, Erik
dc.contributor.author Harris, Linda J.
dc.contributor.author Walkowiak, Sean
dc.contributor.author Subramaniam, Rajagopal
dc.contributor.author Divon, Hege H.
dc.contributor.author Riiser, Even S.
dc.contributor.author Llorens, Carlos, 1968-
dc.contributor.author Gabaldón Estevan, Juan Antonio, 1973-
dc.contributor.author Kistler, H. Corby
dc.contributor.author Jonkers, Wilfried
dc.contributor.author Kolseth, Anna-Karin
dc.contributor.author Nielsen, Kristian F.
dc.contributor.author Thrane, Ulf
dc.contributor.author Frandsen, Rasmus J. N.
dc.date.accessioned 2024-02-20T07:25:51Z
dc.date.available 2024-02-20T07:25:51Z
dc.date.issued 2014
dc.identifier.citation Lysøe E, Harris LJ, Walkowiak S, Subramaniam R, Divon HH, Riiser ES, et al. The genome of the generalist plant pathogen fusarium avenaceum is enriched with genes involved in redox, signaling and secondary metabolism. PLoS ONE. 2014 Nov 19;9(11):e112703. DOI: 10.1371/journal.pone.0112703
dc.identifier.issn 1932-6203
dc.identifier.uri http://hdl.handle.net/10230/59169
dc.description.abstract Fusarium avenaceum is a fungus commonly isolated from soil and associated with a wide range of host plants. We present here three genome sequences of F. avenaceum, one isolated from barley in Finland and two from spring and winter wheat in Canada. The sizes of the three genomes range from 41.6–43.1 MB, with 13217–13445 predicted protein-coding genes. Whole-genome analysis showed that the three genomes are highly syntenic, and share>95% gene orthologs. Comparative analysis to other sequenced Fusaria shows that F. avenaceum has a very large potential for producing secondary metabolites, with between 75 and 80 key enzymes belonging to the polyketide, non-ribosomal peptide, terpene, alkaloid and indole-diterpene synthase classes. In addition to known metabolites from F. avenaceum, fuscofusarin and JM-47 were detected for the first time in this species. Many protein families are expanded in F. avenaceum, such as transcription factors, and proteins involved in redox reactions and signal transduction, suggesting evolutionary adaptation to a diverse and cosmopolitan ecology. We found that 20% of all predicted proteins were considered to be secreted, supporting a life in the extracellular space during interaction with plant hosts.
dc.format.mimetype application/pdf
dc.language.iso eng
dc.publisher Public Library of Science (PLoS)
dc.relation.ispartof PLoS ONE. 2014 Nov 19;9(11):e112703
dc.rights This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.
dc.rights.uri http://creativecommons.org/licenses/by/4.0/
dc.subject.other Genomes
dc.subject.other Relacions planta-sòl
dc.subject.other Fongs
dc.title The genome of the generalist plant pathogen fusarium avenaceum is enriched with genes involved in redox, signaling and secondary metabolism
dc.type info:eu-repo/semantics/article
dc.identifier.doi http://dx.doi.org/10.1371/journal.pone.0112703
dc.rights.accessRights info:eu-repo/semantics/openAccess
dc.type.version info:eu-repo/semantics/publishedVersion

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