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  • Wurth, Laurence; Papasaikas, Panagiotis; Olmeda, David; Bley, Nadine; Calvo, Guadalupe T.; Guerrero Jijon, Santiago Xavier; Cerezo-Wallis, Daniela; Martínez-Useros, Javier; García-Fernández, María; Hüttelmaier, Stefan; Soengas, María S.; Gebauer, Fátima (Elsevier, 2016)
    RNA binding proteins (RBPs) modulate cancer progression through poorly understood mechanisms. Here we show that the RBP UNR/CSDE1 is overexpressed in melanoma tumors and promotes invasion and metastasis. iCLIP sequencing, ...
  • Ullastres, Anna; Farré, Marta; Capilla, Laia; Ruiz Herrera, Aurora (BioMed Central, 2014)
    Background: By reshuffling genomes, structural genomic reorganizations provide genetic variation on which natural selection can work. Understanding the mechanisms underlying this process has been a long-standing question ...
  • Miravet Verde, Samuel; Ferrar, Tony; Espadas, Guadalupe; Mazzolini, Rocco; Gharrab, Anas; Sabidó Aguadé, Eduard, 1981-; Serrano Pubull, Luis, 1982-; Lluch-Senar, Maria 1982- (Wiley Open Access, 2019)
    Identification of small open reading frames (smORFs) encoding small proteins (≤ 100 amino acids; SEPs) is a challenge in the fields of genome annotation and protein discovery. Here, by combining a novel bioinformatics tool ...
  • Durán, Elisa; Djebali, Sarah; González, Santi; Flores, Oscar; Mercader Bigas, Josep Maria; Guigó Serra, Roderic; Torrents, David; Soler López, Montserrat; Orozco, Modesto (Oxford University Press, 2013)
    Although protein recognition of DNA motifs in promoter regions has been traditionally considered as a critical regulatory element in transcription, the location of promoters, and in particular transcription start sites ...
  • Segovia-Aguas, Javier; Jiménez, Sergio; Jonsson, Anders, 1973- (2017)
    In this paper we introduce a novel approach for unsupervised classification of planning instances based on the recent formalism of planning programs. Our approach is inspired by structured prediction in machine learning, ...
  • Batziou, Elissavet; Gialampoukidis, Ilias; Vrochidis, Stefanos; Kompatsiaris, Ioannis (Springer, 2017)
    Nowadays, a large amount of text documents are produced on a daily basis, so we need e cient and e ective access to their con- tent. News articles, blogs and technical reports are often lengthy, so the reader needs a ...
  • Raguz Nakin, Zrinka; Seisenbacher, Gerhard; Posas Garriga, Francesc; Sauer, Uwe (BioMed Central, 2016)
    Background: Coordinated through a complex network of kinases and phosphatases, protein phosphorylation regulates essentially all cellular processes in eukaryotes. Recent advances in proteomics enable detection of thousands ...
  • Vàllez Letrado, Mari; Pedraza, Rafael; Codina, Lluís; Blanco, Saúl; Rovira, Cristòfol (Emerald, 2015)
    Purpose: Controlled vocabularies play an important role in information retrieval. Numerous studies have shown that conceptual searches based on vocabularies are more effective than keyword searches, at least in certain ...
  • Mille, Simon; Latorre, Iván; Wanner, Leo (ACL (Association for Computational Linguistics), 2017)
    This paper describes the runs submitted to EPE 2017 by Universitat Pompeu Fabra. The three outputs correspond to three different levels of linguistic abstraction: (i) a surface-syntactic tree, (ii) a deep-syntactic tree, ...
  • Fomicheva, Marina; Bel Rafecas, Núria; Da Cunha Fanego, Iria; Malinovskiy, Anton (ACL (Association for Computational Linguistics), 2015)
    An important limitation of automatic evaluation metrics is that, when comparing Machine Translation (MT) to a human reference, they are often unable to discriminate between acceptable variation and the differences that are ...
  • Ramíırez-Cifuentes, Diana; Freire, Ana (CEUR Workshop Proceedings, 2018)
    This paper describes the participation of the Web Science and Social Computing Research Group from the Universitat Pompeu Fabra, Barcelona (UPF) at CLEF 2018 eRisk Lab1. Its main goal, di- vided in two different tasks, ...
  • Valls, Gabriela; Codina, Montserrat; Miller, Rachel K.; Valle Pérez, Beatriz del; Vinyoles, Meritxell; Caelles Franch, Carme; McCrea, Pierre D.; García de Herreros, Antonio; Duñach, Mireia (Company of Biologists, 2012)
    A role for Rac1 GTPase in canonical Wnt signaling has recently been demonstrated, showing that it is required for β-catenin translocation to the nucleus. In this study, we investigated the mechanism of Rac1 stimulation by ...
  • Righi, Valeria; Sayago Barrantes, Sergio; Blat, Josep (ACM Association for Computer Machinery, 2015)
    Despite the widespread popularity of smart cities in policy and research fields, and the ever-increasing ageing population in urban areas, ageing issues have seldom been addressed in depth in smart city programs. The main ...
  • Nieuwenhuijsen, Mark J. (BioMed Central, 2016)
    Background: The majority of people live in cities and urbanization is continuing worldwide. Cities have long been known to be society’s predominant engine of innovation and wealth creation, yet they are also a main source ...
  • Pérez-Ferriols, Amparo; Barnadas, Maria; Gardeazábal, Jesús; Argila, Diego de; Carrascosa Carrillo, José Manuel; Aguilera, Paula; Giménez Arnau, Anna Maria; Rodríguez-Granados, Teresa; Gálvez, María Victoria de; Aguilera, José (Elsevier, 2017)
    Antecedentes: La urticaria solar es una urticaria crónica inducible física clasificada también como fotodermatosis idiopática. El objetivo de este trabajo es definir las características fenotípicas y valorar la incidencia ...
  • Cassany, Daniel (Secretaría general técnica, 2002)
  • Hinarejos Gómez, Pedro Angel; Guirro Castellnou, Pau; Puig Verdié, Luís; Torres Claramunt, Raúl; Leal Blanquet, Joan; Sánchez Soler, JF.; Monllau García, Juan Carlos (Baishideng Publishing Group, 2015)
    Bone cement has the capacity to release antibiotic molecules if any antibiotic is included in it, and these elution properties are improved as cement porosity is increased. In vitro studies have shown high local antibiotic ...
  • Jungfleisch, Jennifer, 1986-; Blasco Moreno, Bernat, 1986-; Díez Antón, Juana, 1962- (MDPI, 2016)
    Positive-strand RNA viruses have evolved multiple strategies to not only circumvent the hostile decay machinery but to trick it into being a priceless collaborator supporting viral RNA translation and replication. In this ...
  • Erb, Ionas; González-Vallinas Rostes, Juan, 1983-; Bussotti, Giovanni, 1983-; Blanco, Enrique; Eyras Jiménez, Eduardo; Notredame, Cedric (Oxford University Press, 2012)
    We address the challenge of regulatory sequence alignment with a new method, Pro-Coffee, a multiple aligner specifically designed for homologous promoter regions. Pro-Coffee uses a dinucleotide substitution matrix estimated ...
  • Dierssen Sotos, Trinidad; Servitja Tormo, Sonia; Gracia Lavedan, Esther; Castaño Vinyals, Gemma; Kogevinas, Manolis; Llorca, Javier (BioMed Central, 2016)
    Background: The relationship between non-steroidal anti-inflammatory drug (NSAID) consumption and breast cancer has been repeatedly studied, although the results remain controversial. Most case-control studies reported ...