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MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets

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dc.contributor.author Choi, Meena
dc.contributor.author Chiva, Cristina
dc.contributor.author Sabidó Aguadé, Eduard, 1981-
dc.contributor.author Vitek, Olga
dc.date.accessioned 2020-10-06T05:59:35Z
dc.date.issued 2020
dc.identifier.citation Choi M, Carver J, Chiva C, Tzouros M, Huang T, Tsai TH et al. MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. Nat Methods. 2020; 17(10):981-4. DOI: 10.1038/s41592-020-0955-0
dc.identifier.issn 1548-7091
dc.identifier.uri http://hdl.handle.net/10230/45397
dc.description.abstract MassIVE.quant is a repository infrastructure and data resource for reproducible quantitative mass spectrometry-based proteomics, which is compatible with all mass spectrometry data acquisition types and computational analysis tools. A branch structure enables MassIVE.quant to systematically store raw experimental data, metadata of the experimental design, scripts of the quantitative analysis workflow, intermediate input and output files, as well as alternative reanalyses of the same dataset.
dc.description.sponsorship This work was supported in part by NSF CAREER award no. DBI-1054826, grant no. NSF DBI-1759736 and the Chan-Zuckerberg foundation to O.V., grant no. NIH-NLM 1R01LM013115 to N.B. and O.V., NSF award no. ABI 1759980, NIH award nos. P41GM103484 and R24GM127667 to N.B. and the Personalized Health and Related Technologies (grant no. PHRT 0-21411-18) strategic focus area of ETH to B.W. The CRG/UPF Proteomics Unit is part of the Spanish Infrastructure for Omics Technologies (ICTS OmicsTech) and it is a member of the ProteoRed PRB3 consortium that is supported by grant no. PT17/0019 of the PE I+D+i 2013–2016 from the Instituto de Salud Carlos III (ISCIII) and ERDF. We acknowledge support from the Spanish Ministry of Science, Innovation and Universities, ‘Centro de Excelencia Severo Ochoa 2013–2017’, SEV-2012–0208 and Secretaria d’Universitats i Recerca del Departament d’Economia i Coneixement de la Generalitat de Catalunya (grant no. 2017SGR595). This project has received funding from the European Union’s Horizon 2020 research and innovation program under grant agreement no. 823839 (EPIC-XS). Y.P.-R. acknowledges the Wellcome Trust (grant no. 208391/Z/17/Z).
dc.format.mimetype application/pdf
dc.language.iso eng
dc.publisher Nature Research
dc.relation.ispartof Nat Methods. 2020; 17(10):981-4
dc.rights © Springer Nature Publishing AG. Choi M, Carver J, Chiva C, Tzouros M, Huang T, Tsai TH et al. MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. Nat Methods. 2020; 17(10):981-4. DOI: 10.1038/s41592-020-0955-0 [http://dx.doi.org/10.1038/s41592-020-0955-0]
dc.title MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets
dc.type info:eu-repo/semantics/article
dc.identifier.doi http://dx.doi.org/10.1038/s41592-020-0955-0
dc.subject.keyword Data publication and archiving
dc.subject.keyword Software
dc.relation.projectID info:eu-repo/grantAgreement/EC/H2020/823839
dc.rights.accessRights info:eu-repo/semantics/openAccess
dc.type.version info:eu-repo/semantics/acceptedVersion

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