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dc.contributor.author | Garrido Martín, Diego, 1992- |
dc.contributor.author | Palumbo, Emilio |
dc.contributor.author | Guigó Serra, Roderic |
dc.contributor.author | Breschi, Alessandra, 1988- |
dc.date.accessioned | 2019-04-29T07:56:55Z |
dc.date.available | 2019-04-29T07:56:55Z |
dc.date.issued | 2018 |
dc.identifier.citation | Garrido-Martín D, Palumbo E, Guigó R, Breschi A. ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization. PLoS Comput Biol. 2018;14(8):e1006360. DOI: 10.1371/journal.pcbi.1006360 |
dc.identifier.issn | 1553-734X |
dc.identifier.uri | http://hdl.handle.net/10230/37148 |
dc.description.abstract | We present ggsashimi, a command-line tool for the visualization of splicing events across multiple samples. Given a specified genomic region, ggsashimi creates sashimi plots for individual RNA-seq experiments as well as aggregated plots for groups of experiments, a feature unique to this software. Compared to the existing versions of programs generating sashimi plots, it uses popular bioinformatics file formats, it is annotation-independent, and allows the visualization of splicing events even for large genomic regions by scaling down the genomic segments between splice sites. ggsashimi is freely available at https://github.com/guigolab/ggsashimi. It is implemented in python, and internally generates R code for plotting. |
dc.format.mimetype | application/pdf |
dc.language.iso | eng |
dc.publisher | Public Library of Science (PLoS) |
dc.relation.ispartof | PLOS Computational Biology. 2018;14(8):e1006360 |
dc.rights | © 2018 Garrido-Martín et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
dc.rights.uri | http://creativecommons.org/licenses/by/4.0/ |
dc.title | ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization |
dc.type | info:eu-repo/semantics/article |
dc.identifier.doi | http://dx.doi.org/10.1371/journal.pcbi.1006360 |
dc.rights.accessRights | info:eu-repo/semantics/openAccess |
dc.type.version | info:eu-repo/semantics/publishedVersion |