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ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization

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dc.contributor.author Garrido-Martín, Diego
dc.contributor.author Palumbo, Emilio
dc.contributor.author Guigó Serra, Roderic
dc.contributor.author Breschi, Alessandra, 1988-
dc.date.accessioned 2019-04-29T07:56:55Z
dc.date.available 2019-04-29T07:56:55Z
dc.date.issued 2018
dc.identifier.citation Garrido-Martín D, Palumbo E, Guigó R, Breschi A. ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization. PLoS Comput Biol. 2018; 14(8):e1006360. DOI 10.1371/journal.pcbi.1006360
dc.identifier.issn 1553-734X
dc.identifier.uri http://hdl.handle.net/10230/37148
dc.description.abstract We present ggsashimi, a command-line tool for the visualization of splicing events across multiple samples. Given a specified genomic region, ggsashimi creates sashimi plots for individual RNA-seq experiments as well as aggregated plots for groups of experiments, a feature unique to this software. Compared to the existing versions of programs generating sashimi plots, it uses popular bioinformatics file formats, it is annotation-independent, and allows the visualization of splicing events even for large genomic regions by scaling down the genomic segments between splice sites. ggsashimi is freely available at https://github.com/guigolab/ggsashimi. It is implemented in python, and internally generates R code for plotting.
dc.format.mimetype application/pdf
dc.language.iso eng
dc.publisher Public Library of Science (PLoS)
dc.relation.ispartof PLoS Comput Biol. 2018; 14(8):e1006360
dc.rights © 2018 Garrido-Martín et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
dc.rights.uri http://creativecommons.org/licenses/by/4.0/
dc.title ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
dc.type info:eu-repo/semantics/article
dc.identifier.doi http://dx.doi.org/10.1371/journal.pcbi.1006360
dc.rights.accessRights info:eu-repo/semantics/openAccess
dc.type.version info:eu-repo/semantics/publishedVersion


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