Show simple item record

dc.contributor.author Pérez Llamas, Christian, 1976-
dc.contributor.author Gundem, Gunes
dc.contributor.author López Bigas, Núria
dc.date.accessioned 2015-12-16T15:23:23Z
dc.date.available 2015-12-16T15:23:23Z
dc.date.issued 2011
dc.identifier.citation Perez-Llamas C, Gundem G, Lopez-Bigas N. Integrative cancer genomics (IntOGen) in Biomart. Database : the journal of biological databases and curation. 2011; 2011: bar039. DOI 10.1093/database/bar039
dc.identifier.issn 1758-0463
dc.identifier.uri http://hdl.handle.net/10230/25449
dc.description.abstract Recently, we created IntOGen, a resource to integrate a large amount of cancer genomic data. IntOGen aims at facilitating the detection of the most recurrent alterations that drive tumorigenesis. It collates, annotates and analyzes high-throughput data about transcriptional, genomic and mutational changes taking place in tumors from different studies annotated with specific cancer types. Currently, it contains 118 studies for mRNA expression profiling and 188 studies for genomic alterations covering in total 64 different tumor topographies. In this article, we describe the Biomart portal for IntOGen. The portal provides easy access to different types of data and facilitates the bulk download of all the analysis results. Here, we describe the general features of IntOGen and give example queries to demonstrate its use. Database URL: www.intogen.org.
dc.format.mimetype application/pdf
dc.language.iso eng
dc.publisher Oxford University Press
dc.relation.ispartof Database : the journal of biological databases and curation. 2011; 2011: bar039
dc.rights © 2011 Perez-Llamas et al. This is Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
dc.rights.uri http://creativecommons.org/licenses/by-nc/2.5
dc.subject.other Genòmica
dc.subject.other RNA missatger
dc.subject.other Bases de dades
dc.title Integrative cancer genomics (IntOGen) in Biomart
dc.type info:eu-repo/semantics/article
dc.identifier.doi http://dx.doi.org/10.1093/database/bar039
dc.rights.accessRights info:eu-repo/semantics/openAccess
dc.type.version info:eu-repo/semantics/publishedVersion


This item appears in the following Collection(s)

Show simple item record

Search DSpace


Advanced Search

Browse

My Account

Statistics

Compliant to Partaking