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GENCODE: the reference human genome annotation for The ENCODE Project

Harrow, Jennifer; Tanzer, Andrea; Guigó Serra, Roderic; Hubbard, Tim J. (Cold Spring Harbor Laboratory Press (CSHL Press), 2012)
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

Tilgner, Hagen, 1980-; Knowles, David G.; Johnson, Rory; Davis, Carrie A.; Chakrabortty, Sudipto; Djebali, Sarah; Curado, Joao; Snyder, Michael; Gingeras, Thomas R.; Guigó Serra, Roderic (Cold Spring Harbor Laboratory Press (CSHL Press), 2012)
PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3

Chung, Ho-Ryun; Xu, Chao; Fuchs, Alisa; Mund, Andreas; Lange, Martin; Staege, Hannah; Schubert, Tobias; Bian, Chuanbing; Dunkel, Ilona; Eberharter, Anton; Regnard, Catherine; Klinker, Henrike; Meierhofer, David; Cozzuto, Luca; Winterpacht, Andreas; Di Croce, Luciano; Min, Jinrong; Will, Hans; Kinkley, Sarah (eLife, 2016)
Validation of semaphorin 7A and ala-beta-his-dipeptidase as biomarkers associated with the conversion from clinically isolated syndrome to multiple sclerosis

Cantó, Ester; Tintoré, Mar; Villar, Luisa Maria; Borrás, Eva; Álvarez Cermeño, Jose Carlos; Chiva, Cristina; Sabidó Aguadé, Eduard, 1981-; Rovira, Alex; Montalbán Gairín, Xavier; Comabella López, Manuel (BioMed Central, 2014)
spongeScan: A web for detecting microRNA binding elements in lncRNA sequences

Furió-Tarí, Pedro; Tarazona, Sonia; Gabaldón Estevan, Juan Antonio, 1973-; Enright, Anton J.; Conesa, Ana (Oxford University Press, 2016)
Structure and evolutionary history of a large family of NLR proteins in the zebrafish

Howe, Kerstin; Schiffer, Philipp H.; Zielinski, Julia; Wiehe, Thomas; Laird, Gavin K.; Marioni, John C.; Söylemez, Onuralp, 1985-; Kondrashov, Fyodor A., 1979-; Leptin, Maria (Royal Society, 2016)
Saturation of recognition elements blocks evolution of new tRNA identities

Saint-Léger, Adélaïde; Bello Cabrera, Carla; Dans, Pablo D.; Gabriel Torres, Adrian; Novoa, Eva Maria; Camacho, Noelia; Orozco, Modesto; Kondrashov, Fyodor A., 1979-; Ribas de Pouplana, Lluís (American Association for the Advancement of Science (AAAS), 2016)
Aurora-A regulates MCRS1 function during mitosis

Meunier, Sylvain; Timón Pérez, Krystal; Vernos, Isabelle, 1959- (Taylor & Francis (Routledge), 2016)
From chromatin to splicing: RNA-processing as a total artwork

Tilgner, Hagen, 1980-; Guigó Serra, Roderic (Taylor & Francis (Routledge), 2010)
Reshaping the gut microbiome with bacterial transplantation and antibiotic intake

Manichanh, Chaysavanh; Reeder, Jens; Gibert, Prudence; Varela, Encarna; Llopis, Marta; Antolin, Maria; Guigó Serra, Roderic; Knight, Rob; Guarner, Francisco (Cold Spring Harbor Laboratory Press, 2010)