Browsing by Subject "Hi-C"

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  • Galan Martínez, Silvia, 1992- (Universitat Pompeu Fabra, 2020-11-17)
    El desenvolupament de tècniques experimentals basades en la captura de la conformació genòmica (3C), han aportat informació rellevant sobre l’estructura del genoma. En particular el Hi-C, un derivat del 3C, el qual s’ha ...
  • Gómez Garrido, Jèssica; Cruz, Fernando; Alioto, Tyler; Feiner, Nathalie; Uller, Tobias; Sanchez Escudero, Ignacio; Tavecchia, Giacomo; Rotger, Andreu; Otalora Acevedo, Katherin Eliana; Baldo, Laura (Oxford University Press, 2023)
    The Mediterranean lizard Podarcis lilfordi is an emblematic species of the Balearic Islands. The extensive phenotypic diversity among extant isolated populations makes the species a great insular model system for ...
  • Gómez-Garrido, Jèssica; Cruz, Fernando; Alioto, Tyler; Feiner, Nathalie; Uller, Tobias; Gut, Marta; Sanchez Escudero, Ignacio; Tavecchia, Giacomo; Rotger, Andreu; Otalora Acevedo, Katherin Eliana; Baldo, Laura (Oxford University Press, 2023)
    The Mediterranean lizard Podarcis lilfordi is an emblematic species of the Balearic Islands. The extensive phenotypic diversity among extant isolated populations makes the species a great insular model system for ...
  • Hansen, Peter; Gargano, Michael; Hecht, Jochen; Ibn-Salem, Jonas; Karlebach, Guy; Roehr, Johannes T.; Robinson, Peter N. (MDPI, 2019)
    Hi-C, capture Hi-C (CHC) and Capture-C have contributed greatly to our present understanding of the three-dimensional organization of genomes in the context of transcriptional regulation by characterizing the roles of ...
  • Le Dily, François; Baù, Davide; Pohl, Andy, 1979-; Vicent, Guillermo Pablo; Serra, François; Soronellas, Daniel; Castellano, Giancarlo; Wright, Roni H.G.; Ballare, Cecilia Julia; Filion, Guillaume; Marti-Renom, Marc A.; Beato, Miguel (Cold Spring Harbor Laboratory Press (CSHL Press), 2014)
    The human genome is segmented into topologically associating domains (TADs), but the role of this conserved organization during transient changes in gene expression is not known. Here we describe the distribution of ...
  • Espeso Gil, Sergio, 1985-; Holik, Aliaksei Z.; Bonnin, Sarah; Jhanwar, Shalu, 1986-; Chandrasekaran, Sandhya; Pique Regi, Roger; Albaigès-Ràfols, Júlia; Maher, Michael; Permanyer, Jon; Irimia Martínez, Manuel; Friedländer, Marc R.; Pons Espinal, Meritxell, 1986-; Akbarian, Schahram; Dierssen, Mara; Maass, Philipp G.; Hor, Charlotte N.; Ossowski, Stephan (Frontiers, 2021)
    In early development, the environment triggers mnemonic epigenomic programs resulting in memory and learning experiences to confer cognitive phenotypes into adulthood. To uncover how environmental stimulation impacts the ...
  • Sandoval Velasco, Marcela; Rodríguez, Juan Antonio; Pérez Estrada, Cynthia; Zhang, Guojie; Lieberman Aiden, Erez; Martí Renom, Marc A.; Gilbert, M Thomas; Smith, Oliver (Oxford University Press, 2020)
    Background: Hi-C experiments couple DNA-DNA proximity with next-generation sequencing to yield an unbiased description of genome-wide interactions. Previous methods describing Hi-C experiments have focused on the ...
  • Soler Vila, Paula, 1989- (Universitat Pompeu Fabra, 2019-12-09)
    High-throughput Chromosome Conformation Capture (3C) techniques have provided a comprehensive overview of the genome architecture. Hi-C, a derivative of 3C, has become a reference technique to study the 3D chromatin structure ...
  • Álvarez-González, Lucía; Arias-Sardá, Cristina; Montes-Espuña, Laia; Marín-Gual, Laia; Vara, Covadonga; Lister, Nicholas C.; Cuartero, Yasmina; Garcia, Francisca; Deakin, Janine; Renfree, Marilyn B.; Robinson, Terence J.; Martí Renom, Marc A.; Waters, Paul D.; Farré, Marta; Ruiz Herrera, Aurora (Elsevier, 2022)
    Studying the similarities and differences in genomic interactions between species provides fertile grounds for determining the evolutionary dynamics underpinning genome function and speciation. Here, we describe the ...
  • Cuadrado, Ana; Giménez-Llorente, Daniel; Kojic, Aleksandar; Rodríguez-Corsino, Miriam; Cuartero, Yasmina; Martín-Serrano, Guillermo; Gómez López, Gonzalo; Marti-Renom, Marc A.; Losada, Ana (Elsevier, 2019)
    Cohesin exists in two variants carrying either STAG/SA1 or SA2. Here we have addressed their specific contributions to the unique spatial organization of the mouse embryonic stem cell genome, which ensures super-enhancer-dependent ...

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