Browsing by Author "Vandelli, Andrea"

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  • Delli Ponti, Riccardo, 1987-; Broglia, Laura; Vandelli, Andrea; Armaos, Alexandros, 1989-; Torrent Burgas, Marc; Sanchez de Groot, Natalia; Tartaglia, Gian Gaetano (Wiley, 2023)
    RNA molecules undergo a number of chemical modifications whose effects can alter their structure and molecular interactions. Previous studies have shown that RNA editing can impact the formation of ribonucleoprotein complexes ...
  • Vandelli, Andrea (Universitat Pompeu Fabra, 2023-04-27)
    Ribonucleoprotein condensates such as stress granules (SGs) and processing bodies (PBs) form in response to specific stimuli in the cell. Even though the key protein and RNA elements of these condensates are starting to ...
  • Delli Ponti, Riccardo, 1987-; Armaos, Alexandros, 1989-; Vandelli, Andrea; Tartaglia, Gian Gaetano (Oxford University Press, 2020)
    MOTIVATION: RNA structure is difficult to predict in vivo due to interactions with enzymes and other molecules. Here we introduce CROSSalive, an algorithm to predict the single- and double-stranded regions of RNAs in vivo ...
  • Vecchi, Giulia; Sormanni, Pietro; Mannini, Benedetta; Vandelli, Andrea; Tartaglia, Gian Gaetano; Dobson, Christopher M.; Hartl, F. Ulrich; Vendruscolo, Michele (National Academy of Sciences, 2020)
    To function effectively proteins must avoid aberrant aggregation, and hence they are expected to be expressed at concentrations safely below their solubility limits. By analyzing proteome-wide mass spectrometry data of ...
  • Vandelli, Andrea; Monti, Michele; Milanetti, Edoardo; Armaos, Alexandros, 1989-; Rupert, Jakob; Zacco, Elsa; Bechara, Elias; Delli Ponti, Riccardo, 1987-; Tartaglia, Gian Gaetano (Oxford University Press, 2020)
    Specific elements of viral genomes regulate interactions within host cells. Here, we calculated the secondary structure content of >2000 coronaviruses and computed >100 000 human protein interactions with severe acute ...
  • Vandelli, Andrea; Cid Samper, Fernando, 1991-; Torrent Burgas, Marc; Sánchez de Groot, Natalia; Tartaglia, Gian Gaetano (Elsevier, 2022)
    Condensation, or liquid-like phase separation, is a phenomenon indispensable for the spatiotemporal regulation of molecules within the cell. Recent studies indicate that the composition and molecular organization of ...
  • Vandelli, Andrea; Arnal, Magdalena; Monti, Michele; Fiorentino, Jonathan; Broglia, Laura; Colantoni, Alessio; Sanchez de Groot, Natalia; Torrent Burgas, Marc; Armaos, Alexandros, 1989-; Tartaglia, Gian Gaetano (Oxford University Press, 2023)
    Biological condensates are membraneless organelles with different material properties. Proteins and RNAs are the main components, but most of their interactions are still unknown. Here, we introduce PRALINE, a database for ...
  • Colantoni, Alessio; Rupert, Jakob; Vandelli, Andrea; Tartaglia, Gian Gaetano; Zacco, Elsa (Portland Press, 2020)
    Interactions between proteins and RNA are at the base of numerous cellular regulatory and functional phenomena. The investigation of the biological relevance of non-coding RNAs has led to the identification of numerous ...

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