Browsing by Author "Spalding, J. Dylan"

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  • Beacon v2 and Beacon networks: A "lingua franca" for federated data discovery in biomedical genomics, and beyond
    Rambla de Argila, Jordi; Baudis, Michael; Ariosa, Roberto; Beck, Timothy; Fromont, Lauren A.; Navarro i Cuartiellas, Arcadi, 1969-; Paloots, Rahel; Rueda, Manuel; Saunders, Gary; Singh, Babita, 1986-; Spalding, J. Dylan; Törnoos, Juha; Vasallo, Claudia; Veal, Colin D.; Brookes, Anthony J. (Wiley, 2022)
    Beacon is a basic data discovery protocol issued by the Global Alliance for Genomics and Health (GA4GH). The main goal addressed by version 1 of the Beacon protocol was to test the feasibility of broadly sharing human ...
  • Consent codes: Maintaining consent in an ever-expanding open science ecosystem
    Dyke, Stephanie O. M.; Connor, Kathleen; Nembaware, Victoria; Munung, Nchangwi S.; Reinold, Kathy; Kerry, Giselle; Mbiyavanga, Mamana; Zass, Lyndon; Moldes, Mauricio; Das, Samir; Davis, John M.; Rambla de Argila, Jordi; Spalding, J. Dylan; Evans, Alan C.; Mulder, Nicola; Karamchandani, Jason (Springer, 2023)
    We previously proposed a structure for recording consent-based data use 'categories' and 'requirements' - Consent Codes - with a view to supporting maximum use and integration of genomic research datasets, and reducing ...
  • Consent codes: upholding standard data use conditions
    Dyke, Stephanie O. M.; Philippakis, Anthony A.; Rambla de Argila, Jordi; Paltoo, Dina N.; Luetkemeier, Erin S.; Knoppers, Bartha M.; Brookes, Anthony J.; Spalding, J. Dylan; Thompson, Mark; Roos, Marco; Boycott, Kym M.; Brudno, Michael; Hurles, Matthew; Rehm, Heidi L.; Matern, Andreas; Fiume, Marc; Sherry, Stephen T. (Public Library of Science (PLoS), 2016)
    A systematic way of recording data use conditions that are based on consent permissions as found in the datasets of the main public genome archives (NCBI dbGaP and EMBL-EBI/CRG EGA).