Browsing by Author "Nadal Clanchet, Eulàlia de"

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  • A genetic analysis reveals novel histone residues required for transcriptional reprogramming upon stress
    Viéitez Manrique, Cristina, 1984-; Martínez Cebrián, Gerard, 1992-; Solé, Carme; Böttcher, René; Potel, Clement M.; Savitski, Mikhail M.; Onnebo, Sara; Fabregat, Marc; Shilatifard, Ali; Posas Garriga, Francesc; Nadal Clanchet, Eulàlia de (Oxford University Press, 2020)
    Cells have the ability to sense, respond and adapt to environmental fluctuations. Stress causes a massive reorganization of the transcriptional program. Many examples of histone post-translational modifications (PTMs) have ...
  • A genome-wide functional screen identifies enhancer and protective genes for amyloid beta-peptide toxicity
    Picón-Pagès, Pol; Bosch Morató, Mònica, 1986-; Subirana, Laia; Rubio-Moscardó, Francisca; Guivernau Almazán, Biuse, 1988-; Fanlo-Ucar, Hugo; Zeylan, Melisa Ece; Senyuz, Simge; Herrera-Fernández, Víctor; Vicente García, Rubén, 1978-; Fernández-Fernández, José Manuel, 1967-; García Ojalvo, Jordi; Gursoy, Attila; Keskin, Ozlem; Oliva Miguel, Baldomero; Posas Garriga, Francesc; Nadal Clanchet, Eulàlia de; Muñoz López, Francisco José, 1964- (MDPI, 2023)
    Alzheimer's disease (AD) is known to be caused by amyloid β-peptide (Aβ) misfolded into β-sheets, but this knowledge has not yet led to treatments to prevent AD. To identify novel molecular players in Aβ toxicity, we carried ...
  • A novel mechanism for the prevention of transcription replication conflicts
    Canal de Torres, Berta, 1988-; Duch, Alba; Posas Garriga, Francesc; Nadal Clanchet, Eulàlia de (Taylor & Francis, 2018)
    Transcription and replication complexes can coincide in space and time. Such coincidences may result in collisions that trigger genomic instability. The phosphorylation of Mrc1 by different signaling kinases is part of a ...
  • Control of Cdc28 CDK1 by a stress-induced lncRNA
    Nadal Ribelles, Mariona, 1984-; Solé, Carme; Xu, Zhenyu; Steinmetz, Lars M.; Nadal Clanchet, Eulàlia de; Posas Garriga, Francesc (Elsevier, 2014)
    Genomic analysis has revealed the existence of a large number of long noncoding RNAs (lncRNAs) with different functions in a variety of organisms, including yeast. Cells display dramatic changes of gene expression upon ...
  • Control of S-phase progression in response to stress
    Canal de Torres, Berta (Universitat Pompeu Fabra, 2018-06-06)
    In response to multiple internal and external stresses, yeast cells activate a common transcriptional response known as the Environmental Stress Response (ESR), which can be problematic in S phase, when DNA is being ...
  • Control of transcription by the stress activated Hog1 kinase
    Nadal Ribelles, Mariona, 1984- (Universitat Pompeu Fabra, 2015-05-27)
    A fundamental property of living cells is the ability to sense and robustly respond to fluctuations in their environment. In budding yeast (Saccharomyces cerevisiae) changes in extracellular osmolarity are sensed by the ...
  • Control of transcription initiation by the stress activated hog1 kinase
    Zapater Enrique, Meritxell (Universitat Pompeu Fabra, 2011-04-12)
    En el llevat Saccharomyces cerevisiae els canvis en les condicions osmòtiques del medi extracel.lular són sensades per la MAP cinasa Hog1, la qual permet dur a terme l'adaptació cel.lular mitjançant la modulació de l'expressió ...
  • Control of Ubp3 ubiquitin protease activity by the Hog1 SAPK modulates transcription upon osmostress
    Solé, Carme; Nadal Ribelles, Mariona, 1984-; Kraft, Claudine; Peter, Matthias; Posas Garriga, Francesc; Nadal Clanchet, Eulàlia de (Nature Publishing Group, 2011)
    Protein ubiquitylation is a key process in the regulation of many cellular processes. The balance between the activity of ubiquitin ligases and that of proteases controls the level of ubiquitylation. In response to ...
  • Data-driven identification of inherent features of eukaryotic stress-responsive genes
    Latorre Doménech, Pablo, 1993-; Böttcher, René; Nadal Ribelles, Mariona, 1984-; Li, Constance H.; Solé, Carme; Martínez Cebrián, Gerard, 1992-; Boutros, Paul C.; Posas Garriga, Francesc; Nadal Clanchet, Eulàlia de (Oxford University Press, 2022)
    Living organisms are continuously challenged by changes in their environment that can propagate to stresses at the cellular level, such as rapid changes in osmolarity or oxygen tension. To survive these sudden changes, ...
  • Dealing with transcriptional outbursts during S phase to protect genomic integrity
    Duch, Alba; Nadal Clanchet, Eulàlia de; Posas Garriga, Francesc (Elsevier, 2013)
    Transcription during S phase needs to be spatially and temporally regulated to prevent collisions between the transcription and replication machineries. Cells have evolved a number of mechanisms to make both processes ...
  • Decoding the nature of the transcriptional response to stress
    Latorre Doménech, Pablo (2021-06-16)
    Virtually all living organisms are challenged by changes in their environment, such as sudden increases in osmolarity. To cope with these stresses, cells have developed stress responses that tune every aspect of cell ...
  • Distributed computation in multicellular synthetic networks
    Urrios Garcia, Arturo (Universitat Pompeu Fabra, 2018-12-13)
    Biological systems gather information from the environment and perform computations at multiple levels. Advancements in molecular biology and techniques for cell manipulation, genome engineering and DNA synthesis among ...
  • Functional network analysis reveals the relevance of SKIIP in the regulation of alternative splicing by p38 SAPK
    Carbonell Núñez, Caterina, 1987-; Ulsamer, Arnau; Vivori, Claudia, 1989-; Papasaikas, Panagiotis; Böttcher, René; Joaquin i Caudet, Manel; Miñana Gómez, Belén; Tejedor Vaquero, Juan Ramón, 1984-; Nadal Clanchet, Eulàlia de; Valcárcel, J. (Juan); Posas Garriga, Francesc (Elsevier, 2019)
    Alternative splicing is a prevalent mechanism of gene regulation that is modulated in response to a wide range of extracellular stimuli. Stress-activated protein kinases (SAPKs) play a key role in controlling several steps ...
  • H3K4 monomethylation dictates nucleosome dynamics and chromatin remodeling at stress-responsive genes
    Nadal Ribelles, Mariona, 1984-; Mas Martín, Glòria; Millán Zambrano, Gonzalo; Solé, Carme; Ammerer, Gustav; Chávez, Sebastián; Posas Garriga, Francesc; Nadal Clanchet, Eulàlia de (Oxford University Press, 2015)
    Chromatin remodeling is essential for proper adaptation to extracellular stimuli. The p38-related Hog1 SAPK is an important regulator of transcription that mediates chromatin remodeling upon stress. Hog1 targets the RSC ...
  • Hog1 activation delays mitotic exit via phosphorylation of Net1
    Tognetti, Silvia; Jiménez, Javier; Viganò, Matteo; Duch, Alba; Queralt Badia, Ethel; Nadal Clanchet, Eulàlia de; Posas Garriga, Francesc (National Academy of Sciences, 2020)
    Adaptation to environmental changes is crucial for cell fitness. In Saccharomyces cerevisiae, variations in external osmolarity trigger the activation of the stress-activated protein kinase Hog1 (high-osmolarity glycerol ...
  • Hog1 bypasses stress-mediated down-regulation of transcription by RNA polymerase II redistribution and chromatin remodeling
    Nadal Ribelles, Mariona, 1984-; Conde Pueyo, Núria, 1983-; Flores, Oscar; González-Vallinas Rostes, Juan, 1983-; Eyras Jiménez, Eduardo; Nadal Clanchet, Eulàlia de; Posas Garriga, Francesc (BioMed Central, 2012)
    Cells are subjected to dramatic changes of gene expression upon environmental changes. Stress/ncauses a general down-regulation of gene expression together with the induction of a set of stress-responsive/ngenes. The ...
  • Identification of novel histone marks required for the transcriptional stress response
    Martínez Cebrián, Gerard, 1992- (Universitat Pompeu Fabra, 2019-12-03)
    Upon environmental stresses such as temperature fluctuations or increases in osmolarity, yeast Saccharomyces cerevisiae induces a transcriptional reprograming in order to survive and adapt to the stress. Histone ...
  • Implementation of complex biological logic circuits using spatially distributed multicellular consortia
    Macía, Javier; Manzoni, Romilde; Conde Pueyo, Núria, 1983-; Urrios Garcia, Arturo, 1990-; Nadal Clanchet, Eulàlia de; Solé Vicente, Ricard, 1962-; Posas Garriga, Francesc (Public Library of Science (PLoS), 2016)
    Engineered synthetic biological devices have been designed to perform a variety of functions from sensing molecules and bioremediation to energy production and biomedicine. Notwithstanding, a major limitation of in vivo ...
  • Implementing re-configurable biological computation with distributed multicellular consortia
    Canadell, David; Ortiz Vaquerizas, Nicolás; Mogas Díez, Sira; Nadal Clanchet, Eulàlia de; Macía, Javier; Posas Garriga, Francesc (Oxford University Press, 2022)
    The use of synthetic biological circuits to deal with numerous biological challenges has been proposed in several studies, but its implementation is still remote. A major problem encountered is the complexity of the cellular ...
  • Interaction Dynamics Determine Signaling and Output Pathway Responses
    Stojanovski, Klement; Ferrar, Tony; Benisty, Hannah, 1986-; Uschner, Friedemann; Delgado Blanco, Javier; Jimenez, Javier; Solé, Carme; Nadal Clanchet, Eulàlia de; Klipp, E., 1965-; Posas Garriga, Francesc; Serrano Pubull, Luis, 1982-; Kiel, Christina (Elsevier, 2017)
    The understanding of interaction dynamics in signaling pathways can shed light on pathway architecture and provide insights into targets for intervention. Here, we explored the relevance of kinetic rate constants of a key ...

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