Browsing by Author "Gopalakrishnan, Shyam"

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  • Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
    Mak, Sarah Siu Tze; Gopalakrishnan, Shyam; Carøe, Christian; Geng, Chunyu; Liu, Shanlin; Sinding, Mikkel Holger S.; Kuderna, Lukas F.K.; Zhang, Wenwei; Fu, Shujin; Vieira, Filipe Garrett; Germonpré, Mietje; Bocherens, Hervé; Fedorov, Sergey E.; Petersen, Bent; Sicheritz-Ponten, Thomas; Marquès i Bonet, Tomàs, 1975-; Zhang, Guojie; Jiang, Hui; Gilbert, M Thomas (Oxford University Press, 2017)
    Ancient DNA research has been revolutionized following development of next-generation sequencing platforms. Although a number of such platforms have been applied to ancient DNA samples, the Illumina series are the dominant ...
  • Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)
    Sánchez-Barreiro, Fátima; Gopalakrishnan, Shyam; Ramos-Madrigal, Jazmín; Westbury, Michael V.; Manuel Montero, Marc de, 1991-; Margaryan, Ashot; Ciucani, Marta M.; Vieira, Filipe Garrett; Patramanis, Yannis; Kalthoff, Daniela C.; Timmons, Zena; Sicheritz-Ponten, Thomas; Dalén, Love; Ryder, Oliver A.; Zhang, Guojie; Marquès i Bonet, Tomàs, 1975-; Moodley, Yoshan; Gilbert, M Thomas (Wiley, 2021)
    Large vertebrates are extremely sensitive to anthropogenic pressure, and their populations are declining fast. The white rhinoceros (Ceratotherium simum) is a paradigmatic case: this African megaherbivore has suffered a ...
  • Interspecific gene flow shaped the evolution of the genus canis
    Gopalakrishnan, Shyam; Montero, Marc de Manuel; Kuderna, Lukas F.K.; Serres Armero, Aitor, 1992-; González-Basallote, Víctor Manuel; Marquès i Bonet, Tomàs, 1975-; Gilbert, M Thomas (Elsevier, 2018)
    The evolutionary history of the wolf-like canids of the genus Canis has been heavily debated, especially regarding the number of distinct species and their relationships at the population and species level [1-6]. We assembled ...
  • Plasmodium vivax malaria viewed through the lens of an eradicated european strain
    van Dorp, Lucy; Gelabert Xirinachs, Pere, 1991-; Rieux, Adrien; de Manuel, Marc; de Dios, Toni; Gopalakrishnan, Shyam; Carøe, Christian; Sandoval Velasco, Marcela; Fregel, Rosa; Olalde Marquínez, Íñigo, 1987-; Escosa, Raül; Aranda, Carles; Huijben, Silvie; Mueller, Ivo; Marquès i Bonet, Tomàs, 1975-; Balloux, François; Gilbert, M Thomas; Lalueza Fox, Carles, 1965- (Oxford University Press, 2020)
    The protozoan Plasmodium vivax is responsible for 42% of all cases of malaria outside Africa. The parasite is currently largely restricted to tropical and subtropical latitudes in Asia, Oceania, and the Americas. Though, ...
  • The population genomic legacy of the second plague pandemic
    Gopalakrishnan, Shyam; Juan, David; Gelabert Xirinachs, Pere, 1991-; Marquès i Bonet, Tomàs, 1975-; Lalueza Fox, Carles, 1965-; Gilbert, M Thomas (Elsevier, 2022)
    Human populations have been shaped by catastrophes that may have left long-lasting signatures in their genomes. One notable example is the second plague pandemic that entered Europe in ca. 1,347 CE and repeatedly returned ...
  • The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
    Gopalakrishnan, Shyam; Samaniego Castruita, Jose A.; Strander Sinding, Mikkel Holger; Kuderna, Lukas F.K.; Petersen, Bent; Sicheritz-Ponten, Thomas; Larson, Greger; Orlando, Ludovic; Marquès i Bonet, Tomàs, 1975-; Hansen, Anders J.; Dalén, Love; Gilbert, M Thomas (BioMed Central, 2017)
    Background: An increasing number of studies are addressing the evolutionary genomics of dog domestication, principally through resequencing dog, wolf and related canid genomes. There is, however, only one de novo assembled ...