Browsing by Author "Gilbert, M Thomas"

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  • Westbury, Michael V.; Barnett, Ross; Sandoval Velasco, Marcela; Gower, Graham; Garrett Vieira, Filipe; Manuel Montero, Marc de, 1991-; Hansen, Anders J.; Yamaguchi, Nobuyuki; Werdelin, Lars; Marquès i Bonet, Tomàs, 1975-; Gilbert, M Thomas; Lorenzen, Eline D. (UNLISTED PUBLISHER, 2021)
    Background: The evolutionary relationships of Felidae during their Early–Middle Miocene radiation is contentious. Although the early common ancestors have been subsumed under the grade-group Pseudaelurus, this group is ...
  • Liu, Shanlin; Marquès i Bonet, Tomàs, 1975-; Gilbert, M Thomas (Elsevier, 2021)
    Only five species of the once-diverse Rhinocerotidae remain, making the reconstruction of their evolutionary history a challenge to biologists since Darwin. We sequenced genomes from five rhinoceros species (three extinct ...
  • Mak, Sarah Siu Tze; Gopalakrishnan, Shyam; Carøe, Christian; Geng, Chunyu; Liu, Shanlin; Sinding, Mikkel Holger S.; Kuderna, Lukas F.K.; Zhang, Wenwei; Fu, Shujin; Vieira, Filipe Garrett; Germonpré, Mietje; Bocherens, Hervé; Fedorov, Sergey E.; Petersen, Bent; Sicheritz-Ponten, Thomas; Marquès i Bonet, Tomàs, 1975-; Zhang, Guojie; Jiang, Hui; Gilbert, M Thomas (Oxford University Press, 2017)
    Ancient DNA research has been revolutionized following development of next-generation sequencing platforms. Although a number of such platforms have been applied to ancient DNA samples, the Illumina series are the dominant ...
  • de Dios, Toni; van Dorp, Lucy; Gelabert Xirinachs, Pere, 1991-; Carøe, Christian; Sandoval Velasco, Marcela; Fregel, Rosa; Escosa, Raül; Aranda, Carles; Huijben, Silvie; Balloux, François; Gilbert, M Thomas; Lalueza Fox, Carles, 1965- (Microbiology Society, 2019)
    Malaria was present in most of Europe until the second half of the 20th century, when it was eradicated through a combination of increased surveillance and mosquito control strategies, together with cross-border and political ...
  • Barnett, Ross; de Manuel, Marc; Marquès i Bonet, Tomàs, 1975-; Gilbert, M Thomas (Elsevier, 2020)
    Homotherium was a genus of large-bodied scimitar-toothed cats, morphologically distinct from any extant felid species, that went extinct at the end of the Pleistocene [1-4]. They possessed large, saber-form serrated canine ...
  • Sánchez Quinto, Federico A, 1985-; Schroeder, Hannes; Ramírez, Oscar; Ávila Arcos, María C.; Pybus Oliveras, Marc, 1985-; Olalde Marquínez, Íñigo, 1987-; Velázquez, Amhed M.V.; Prada Marcos, María Encina; Vidal Encinas, Julio Manuel; Bertranpetit, Jaume, 1952-; Orlando, Ludovic; Gilbert, M Thomas; Lalueza Fox, Carles, 1965- (Elsevier, 2012)
    The genetic background of the European Mesolithic and the extent of population replacement during the Neolithic is poorly understood, both due to the scarcity of human remains from that period and the inherent methodological ...
  • Sandoval Velasco, Marcela; Rodríguez, Juan Antonio; Pérez Estrada, Cynthia; Zhang, Guojie; Lieberman Aiden, Erez; Martí Renom, Marc A.; Gilbert, M Thomas; Smith, Oliver (Oxford University Press, 2020)
    Background: Hi-C experiments couple DNA-DNA proximity with next-generation sequencing to yield an unbiased description of genome-wide interactions. Previous methods describing Hi-C experiments have focused on the ...
  • Sánchez-Barreiro, Fátima; Gopalakrishnan, Shyam; Ramos-Madrigal, Jazmín; Westbury, Michael V.; Manuel Montero, Marc de, 1991-; Margaryan, Ashot; Ciucani, Marta M.; Vieira, Filipe Garrett; Patramanis, Yannis; Kalthoff, Daniela C.; Timmons, Zena; Sicheritz-Ponten, Thomas; Dalén, Love; Ryder, Oliver A.; Zhang, Guojie; Marquès i Bonet, Tomàs, 1975-; Moodley, Yoshan; Gilbert, M Thomas (Wiley, 2021)
    Large vertebrates are extremely sensitive to anthropogenic pressure, and their populations are declining fast. The white rhinoceros (Ceratotherium simum) is a paradigmatic case: this African megaherbivore has suffered a ...
  • Gopalakrishnan, Shyam; Montero, Marc de Manuel; Kuderna, Lukas F.K.; Serres Armero, Aitor, 1992-; González-Basallote, Víctor Manuel; Marquès i Bonet, Tomàs, 1975-; Gilbert, M Thomas (Elsevier, 2018)
    The evolutionary history of the wolf-like canids of the genus Canis has been heavily debated, especially regarding the number of distinct species and their relationships at the population and species level [1-6]. We assembled ...
  • van Dorp, Lucy; Gelabert Xirinachs, Pere, 1991-; Rieux, Adrien; de Manuel, Marc; de Dios, Toni; Gopalakrishnan, Shyam; Carøe, Christian; Sandoval Velasco, Marcela; Fregel, Rosa; Olalde Marquínez, Íñigo, 1987-; Escosa, Raül; Aranda, Carles; Huijben, Silvie; Mueller, Ivo; Marquès i Bonet, Tomàs, 1975-; Balloux, François; Gilbert, M Thomas; Lalueza Fox, Carles, 1965- (Oxford University Press, 2020)
    The protozoan Plasmodium vivax is responsible for 42% of all cases of malaria outside Africa. The parasite is currently largely restricted to tropical and subtropical latitudes in Asia, Oceania, and the Americas. Though, ...
  • Vives, Sergi; Gilbert, M Thomas; Arenas, Conxita; Gigli, Elena, 1978-; Lao Grueso, Oscar, 1976-; Lalueza Fox, Carles, 1965- (BioMed Central, 2008)
    Background: We have analysed the distribution of post mortem DNA damage derived miscoding lesions from the datasets of seven published Neandertal specimens that have extensive cloned sequence coverage over the mitochondrial ...
  • de Manuel, Marc; Marquès i Bonet, Tomàs, 1975-; Gilbert, M Thomas (National Academy of Sciences, 2020)
    Lions are one of the world's most iconic megafauna, yet little is known about their temporal and spatial demographic history and population differentiation. We analyzed a genomic dataset of 20 specimens: two ca. 30,000-y-old ...
  • Fontseré Alemany, Clàudia, 1992-; Frandsen, Peter; Hernández Rodríguez, Jéssica, 1983-; Niemann, Jonas; Scharff-Olsen, Camilla Hjorth; Vallet, Dominique; Le Gouar, Pascaline; Ménard, Nelly; Navarro i Cuartiellas, Arcadi, 1969-; Siegismund, Hans R.; Hvilsom, Christina; Gilbert, M Thomas; Kuhlwilm, Martin; Hughes, David; Marquès i Bonet, Tomàs, 1975- (BioMed Central, 2021)
    Background: Numerous Ebola virus outbreaks have occurred in Equatorial Africa over the past decades. Besides human fatalities, gorillas and chimpanzees have also succumbed to the fatal virus. The 2004 outbreak at the ...
  • Feng, Shaohong; Fang, Qi; Barnett, Ross; Li, Cai; Han, Sojung; Kuhlwilm, Martin; Zhou, Long; Pan, Hailin; Deng, Yuan; Chen, Guangji; Gamauf, Anita; Woog, Friederike; Prys-Jones, Robert; Marquès i Bonet, Tomàs, 1975-; Gilbert, M Thomas; Zhang, Guojie (Elsevier, 2019)
    Human-induced environmental change and habitat fragmentation pose major threats to biodiversity and require active conservation efforts to mitigate their consequences. Genetic rescue through translocation and the introduction ...
  • Gopalakrishnan, Shyam; Samaniego Castruita, Jose A.; Strander Sinding, Mikkel Holger; Kuderna, Lukas F.K.; Petersen, Bent; Sicheritz-Ponten, Thomas; Larson, Greger; Orlando, Ludovic; Marquès i Bonet, Tomàs, 1975-; Hansen, Anders J.; Dalén, Love; Gilbert, M Thomas (BioMed Central, 2017)
    Background: An increasing number of studies are addressing the evolutionary genomics of dog domestication, principally through resequencing dog, wolf and related canid genomes. There is, however, only one de novo assembled ...