Browsing by Author "Fornés Crespo, Oriol, 1983-"

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  • Gitter, Anthony; Siegfried, Zehava; Klutstein, Michael; Fornés Crespo, Oriol, 1983-; Oliva Miguel, Baldomero; Simon, Itamar; Bar-Joseph, Ziv (EMBO Press, 2009)
    The complementarity of gene expression and protein-DNA interaction data led to several successful models of biological systems. However, recent studies in multiple species raise doubts about the relationship between these ...
  • Sieberts, Solveig K.; García-García, Javier, 1982-; Aguilar, Daniel; Anton, Bernat; Bonet Martínez, Jaume, 1982-; Fornés Crespo, Oriol, 1983-; Marín López, Manuel Alejandro, 1987-; Planas Iglesias, Joan, 1980-; Poglayen, Daniel, 1984-; Oliva Miguel, Baldomero; Mangravite, Lara M. (Nature Publishing Group, 2016)
    Rheumatoid arthritis (RA) affects millions world-wide. While anti-TNF treatment is widelyused to reduce disease progression, treatment fails inBone-third of patients. No biomarkercurrently exists that identifies non-responders ...
  • Meseguer, Alberto; Årman, Filip; Fornés Crespo, Oriol, 1983-; Molina Fernández, Rubén; Bonet Martínez, Jaume, 1982-; Fernández Fuentes, Narcís; Oliva Miguel, Baldomero (Oxford University Press, 2020)
    Cis2-His2 zinc finger (C2H2-ZF) proteins are the largest family of transcription factors in human and higher metazoans. To date, the DNA-binding preferences of many members of this family remain unknown. We have developed ...
  • Anton, Bernat; Besalú, Mireia; Fornés Crespo, Oriol, 1983-; Bonet Martínez, Jaume, 1982-; Molina, Alexis; Molina Fernández, Rubén; Cuevas, Gemma de las; Fernández Fuentes, Narcís; Oliva Miguel, Baldomero (Oxford University Press, 2021)
    Direct-coupling analysis (DCA) for studying the coevolution of residues in proteins has been widely used to predict the three-dimensional structure of a protein from its sequence. We present RADI/raDIMod, a variation of ...
  • Gohl, Patrick; Bonet Martínez, Jaume, 1982-; Fornés Crespo, Oriol, 1983-; Planas Iglesias, Joan, 1980-; Fernández Fuentes, Narcís; Oliva Miguel, Baldomero (Oxford University Press, 2023)
    Summary: The SBILib Python library provides an integrated platform for the analysis of macromolecular structures and interactions. It combines simple 3D file parsing and workup methods with more advanced analytical tools. ...
  • Aguirre Plans, Joaquim, 1993-; Meseguer, Alberto; Molina Fernández, Rubén; Marín López, Manuel Alejandro, 1987-; Jumde, Gaurav; Casanova, Kevin; Bonet Martínez, Jaume, 1982-; Fornés Crespo, Oriol, 1983-; Fernández Fuentes, Narcís; Oliva Miguel, Baldomero (BioMed Central, 2021)
    Background: Statistical potentials, also named knowledge-based potentials, are scoring functions derived from empirical data that can be used to evaluate the quality of protein folds and protein-protein interaction (PPI) ...

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