Browsing by Author "Dohm, Juliane C."

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  • Crop wild relative populations of Beta vulgaris allow direct mapping of agronomically important genes
    Capistrano-Gossmann, Gina G.; Ries, David; Holtgräwe, Daniela; Minoche, André E.; Kraft, Thomas; Frerichmann, Sebastian L.M.; Rosleff Soerensen, T.; Dohm, Juliane C.; González Navarrete, Irene, 1983-; Schilhabel, Markus B.; Varrelmann, Mark; Tschoep, Hendrik; Uphoff, Hubert; Schütze, Katia; Borchardt, Dietrich C.; Toerjek, O.; Mechelke, Wolfgang; Lein, Jens Christoph; Schechert, Axel W.; Frese, Lothar; Himmelbauer, Heinz; Weisshaar, Bernd; Kopisch-Obuch, Friedrich J. (Nature Publishing Group, 2017)
    Rapid identification of agronomically important genes is of pivotal interest for crop breeding. One source of such genes are crop wild relative (CWR) populations. Here we used a CWR population of <200 wild beets (B. vulgaris ...
  • Exploiting single-molecule transcript sequencing for eukaryotic gene prediction
    Minoche, André E.; Dohm, Juliane C.; Schneider, Jessica; Holtgräwe, Daniela; Viehöver, Prisca; Montfort, Magda; Sörensen, Thomas Rosleff; Weisshaar, Bernd; Himmelbauer, Heinz (BioMed Central, 2015)
    We develop a method to predict and validate gene models using PacBio single-molecule, real-time (SMRT) cDNA reads. Ninety-eight percent of full-insert SMRT reads span complete open reading frames. Gene model validation ...
  • Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor
    Llorens, Franc; Hummel, Manuela; Pantano Rubiño, Lorena, 1982-; Pastor, Xavier; Vivancos Prellezo, Ana; Castillo Andreo, Esther; Mattlin, Heidi; Ferrer Admetlla, Anna; Ingham, Matthew; Noguera, Marc; Kofler, Robert; Dohm, Juliane C.; Pluvinet, Raquel; Bayés, Mònica; Himmelbauer, Heinz; del Río, José Antonio; Martí, Eulàlia; Sumoy Van Dyck, Lauro (BioMed Central, 2013)
    Background: Epidermal Growth Factor (EGF) plays an important function in the regulation of cell growth, proliferation, and differentiation by binding to its receptor (EGFR) and providing cancer cells with increased survival ...
  • Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis
    Llorens, Franc; Hummel, Manuela; Pastor Ruiz, Javier; Ferrer Salvador, Anna; Pluvinet, Raquel; Vivancos Prellezo, Ana; Castillo Andreo, Esther; Iraola Guzman, Susana; Mosquera Miguel, Ana; González-Roca, Eva; Lozano, Juan José; Ingham, Matthew; Dohm, Juliane C.; Noguera, Marc; Kofler, Robert; Río, Jose Antonio del; Bayés, Mònica; Himmelbauer, Heinz; Sumoy Van Dyck, Lauro (BioMed Central, 2011)
    Background: Epidermal Growth Factor (EGF) is a key regulatory growth factor activating many processes relevant to normal development and disease, affecting cell proliferation and survival. Here we use a combined approach ...
  • Parental origin of the allotetraploid tobacco Nicotiana benthamiana
    Schiavinato, Matteo; Marcet Houben, Marina; Dohm, Juliane C.; Gabaldón Estevan, Juan Antonio, 1973-; Himmelbauer, Heinz (Wiley-Blackwell, 2019)
    Nicotiana section Suaveolentes is an almost all-Australian clade of allopolyploid tobacco species including the important plant model Nicotiana benthamiana. The homology relationships of this clade and its formation are ...
  • Putting hornets on the genomic map
    Favreau, Emeline; Cini, Alessandro; Taylor, Daisy; Câmara Ferreira, Francisco; Bentley, Michael A.; Cappa, Federico; Cervo, Rita; Privman, Eyal; Schneider, Jadesada; Thiéry, Denis; Mashoodh, Rahia; Wyatt, Christopher Douglas Robert, 1988-; Brown, Robert L.; Bodrug-Schepers, Alexandrina; Stralis-Pavese, Nancy; Dohm, Juliane C.; Mead, Daniel; Himmelbauer, Heinz; Guigó Serra, Roderic; Sumner, Seirian (Nature Research, 2023)
    Hornets are the largest of the social wasps, and are important regulators of insect populations in their native ranges. Hornets are also very successful as invasive species, with often devastating economic, ecological and ...
  • The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
    Dohm, Juliane C.; Minoche, André E.; Holtgräwe, Daniela; Capella Gutiérrez, Salvador Jesús, 1985-; Zakrzewski, Falk; Tafer, Hakim; Rupp, Oliver; Sörensen, Thomas Rosleff; Stracke, Ralf; Reinhardt, Richard; Goesmann, Alexander; Kraft, Thomas; Schulz, Britta; Stadler, Peter F.; Schmidt, Thomas; Gabaldón Estevan, Juan Antonio, 1973-; Lehrach, Hans; Weisshaar, Bernd; Himmelbauer, Heinz (Nature Publishing Group, 2014)
    Sugar beet (Beta vulgaris ssp. vulgaris) is an important crop of temperate climates which provides nearly 30% of the world's annual sugar production and is a source for bioethanol and animal feed. The species belongs to ...
  • Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia
    Puente, Xosé S.; Escaramís, Geòrgia; Bassaganyas Bars, Laia, 1985-; Tubio, José M. C.; Tornador Antolin, Cristian, 1979-; Himmelbauer, Heinz; Castillo Andreo, Esther; Dohm, Juliane C.; Guigó Serra, Roderic; Estivill, Xavier, 1955-; Campo, Elias (Nature Research, 2011)
    Chronic lymphocytic leukaemia (CLL), the most frequent leukaemia in adults in Western countries, is a heterogeneous disease with variable clinical presentation and evolution. Two major molecular subtypes can be distinguished, ...