Browsing by Author "Cruz, Fernando"

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  • Mosca, Elena; Cruz, Fernando; Gómez-Garrido, Jèssica; Gut, Marta; Alioto, Tyler; Neale, David D. (Genetics Society of America, 2019)
    Silver fir (Abies alba Mill.) is a keystone conifer of European montane forest ecosystems that has experienced large fluctuations in population size during during the Quaternary and, more recently, due to land-use change. ...
  • Liedtke, H. Christoph; Cruz, Fernando; Gómez Garrido, Jèssica; Fuentes Palacios, Diego; Marcet Houben, Marina; Gut, Marta; Alioto, Tyler; Gabaldón Estevan, Juan Antonio, 1973-; Gomez-Mestre, Ivan (Oxford University Press, 2022)
    Genomic resources for amphibians are still hugely under-represented in vertebrate genomic research, despite being a group of major interest for ecology, evolution and conservation. Amphibians constitute a highly threatened ...
  • Thomy, Julie; Sanchez, Frederic; Gut, Marta; Cruz, Fernando; Alioto, Tyler; Piganeau, Gwenael; Grimsley, Nigel; Yau, Sheree (MDPI, 2021)
    Ostreococcus tauri is a simple unicellular green alga representing an ecologically important group of phytoplankton in oceans worldwide. Modern molecular techniques must be developed in order to understand the mechanisms ...
  • Guerrero-Cózar, Israel; Perez-Garcia, Cathaysa; Benzekri, Hicham; Sánchez, J. J.; Seoane, Pedro; Cruz, Fernando; Gut, Marta; Zamorano, Maria Jesus; Gonzalo, Claros M.; Manchado, Manuel (Nature Research, 2020)
    The Senegalese sole (Solea senegalensis) is an economically important flatfish species. In this study, a genome draft was analyzed to identify microsatellite (SSR) markers for whole-genome genotyping. A subset of 224 contigs ...
  • Abascal, Federico; Corvelo, André; Cruz, Fernando; Villanueva Cañas, José Luis, 1984-; Vlasova, Anna; Marcet Houben, Marina; Prieto Barja, Pablo, 1986-; Quilez Oliete, Javier; Frias, Leonor; Ribeca, Paolo; Capella Gutiérrez, Salvador Jesús, 1985-; Câmara Ferreira, Francisco; Lowy Gallego, Ernesto; Cozzuto, Luca; Erb, Ionas; Rodríguez Ales, José Luis; Ruiz Orera, Jorge, 1988-; Reverter, Ferran; Derdak, Sophia; Blanc, Julie; Gut, Marta; Lorente-Galdós, Belén, 1981-; Gut, Ivo Glynne; Guigó Serra, Roderic; Gabaldón Estevan, Juan Antonio, 1973-; Godoy, José A. (BioMed Central, 2016)
    Background: Genomic studies of endangered species provide insights into their evolution and demographic history, reveal patterns of genomic erosion that might limit their viability, and offer tools for their effective ...
  • Cruz, Fernando; Julca, Irene; Gómez Garrido, Jèssica; Loska, Damian; Marcet Houben, Marina; Cano, Emilio; Galán Sicilia, Beatriz; Frias, Leonor; Ribeca, Paolo; Derdak, Sophia; Gut, Marta; Sánchez Fernández, Manuel; García, Jose Luis; Gut, Ivo Glynne; Vargas Gómez, Pablo; Alioto, Tyler; Gabaldón Estevan, Juan Antonio, 1973- (BioMed Central, 2016)
    Background: The Mediterranean olive tree (Olea europaea subsp. europaea) was one of the first trees to be domesticated and is currently of major agricultural importance in the Mediterranean region as the source of olive ...
  • Almudí, Isabel; Wyatt, Christopher Douglas Robert, 1988-; Cruz, Fernando; Gómez-Garrido, Jèssica; Gut, Marta; Alioto, Tyler; Irimia, Manuel; Casares, Fernando (Nature Research, 2020)
    The evolution of winged insects revolutionized terrestrial ecosystems and led to the largest animal radiation on Earth. However, we still have an incomplete picture of the genomic changes that underlay this diversification. ...
  • Julca, Irene; Marcet Houben, Marina; Cruz, Fernando; Gómez Garrido, Jèssica; Gaut, Brandon S.; Díez, Concepción M.; Gut, Ivo Glynne; Alioto, Tyler; Vargas Gómez, Pablo; Gabaldón Estevan, Juan Antonio, 1973- (BioMed Central, 2020)
    Background: Olive tree (Olea europaea L. subsp. europaea, Oleaceae) has been the most emblematic perennial crop for Mediterranean countries since its domestication around 6000 years ago in the Levant. Two taxonomic varieties ...
  • Gerdol, Marco; Cruz, Fernando; Gómez-Garrido, Jèssica; Vlasova, Anna; Naranjo Ortiz, Miguel Ángel, 1989-; Corvelo, André; Frias, Leonor; Gut, Marta; Gabaldón Estevan, Juan Antonio, 1973-; Alioto, Tyler; Figueras, Antonio (BioMed Central, 2020)
    Background: The Mediterranean mussel Mytilus galloprovincialis is an ecologically and economically relevant edible marine bivalve, highly invasive and resilient to biotic and abiotic stressors causing recurrent massive ...
  • Kleinman Ruiz, Daniel; Martínez Cruz, Begoña; Soriano, Laura; Lucena Pérez, María; Cruz, Fernando; Villanueva, Beatriz; Fernández, Jesús María; Godoy, José A. (BioMed Central, 2017)
    BACKGROUND: The Iberian lynx (Lynx pardinus) has been acknowledged as the most endangered felid species in the world. An intense contraction and fragmentation during the twentieth century left less than 100 individuals ...
  • Julca, Irene; Marcet Houben, Marina; Cruz, Fernando; Vargas-Chavez, Carlos; Johnston, John Spencer; Gómez Garrido, Jèssica; Frias, Leonor; Corvelo, André; Loska, Damian; Cámara, Francisco; Gut, Marta; Alioto, Tyler; Latorre, Amparo; Gabaldón Estevan, Juan Antonio, 1973- (Oxford University Press, 2020)
    Aphids (Aphidoidea) are a diverse group of hemipteran insects that feed on plant phloem sap. A common finding in studies of aphid genomes is the presence of a large number of duplicated genes. However, when these duplications ...
  • Alioto, Tyler; Cruz, Fernando; Gómez Garrido, Jèssica; Triyatni, Miriam; Gut, Marta; Frias, Leonor; Esteve-Codina, Anna; Menne, Stephan; Kiialainen, Anna; Kumpesa, Nadine; Birzele, Fabian; Schmucki, Roland; Gut, Ivo Glynne; Spleiss, Olivia (Genetics Society of America, 2019)
    The Eastern woodchuck (Marmota monax) has been extensively used in research of chronic hepatitis B and liver cancer because its infection with the woodchuck hepatitis virus closely resembles a human hepatitis B virus ...
  • Ledoux, Jean-Baptiste; Cruz, Fernando; Gómez Garrido, Jèssica; Antoni, Regina; Blanc, Julie; Gómez Gras, Daniel; Kipson, Silvija; López Sendino, Paula; Antunes, Agostinho; Linares, Cristina; Gut, Marta; Alioto, Tyler; Garrabou, Joaquim (Genetics Society of America, 2020)
    The octocoral, Paramuricea clavata, is a habitat-forming anthozoan with a key ecological role in rocky benthic and biodiversity-rich communities in the Mediterranean and Eastern Atlantic. Shallow populations of P. clavata ...
  • Puerma, Eva; Orengo, Dorcas J.; Cruz, Fernando; Gómez Garrido, Jèssica; Librado, Pablo; Salguero, David; Papaceit, Montserrat; Gut, Marta; Segarra, Carmen; Alioto, Tyler; Aguadé, Montserrat (Oxford University Press, 2018)
    Drosophila guanche is a member of the obscura group that originated in the Canary Islands archipelago upon its colonization by D. subobscura. It evolved into a new species in the laurisilva, a laurel forest present in wet ...
  • Alioto, Tyler; Cruz, Fernando; Frias, Leonor; Gómez Garrido, Jèssica; Gut, Marta; Julca, Irene; Ribeca, Paolo; Vlasova, Anna; Gabaldón Estevan, Juan Antonio, 1973-; Arús, Pere (Wiley-VCH Verlag, 2020)
    We sequenced the genome of the highly heterozygous almond Prunus dulcis cv. Texas combining short- and long-read sequencing. We obtained a genome assembly totaling 227.6 Mb of the estimated almond genome size of 238 Mb, ...