Browsing by Author "Kuderna, Lukas F.K."

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  • The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
    Gopalakrishnan, Shyam; Samaniego Castruita, Jose A.; Strander Sinding, Mikkel Holger; Kuderna, Lukas F.K.; Petersen, Bent; Sicheritz-Ponten, Thomas; Larson, Greger; Orlando, Ludovic; Marquès i Bonet, Tomàs, 1975-; Hansen, Anders J.; Dalén, Love; Gilbert, M Thomas (BioMed Central, 2017)
    Background: An increasing number of studies are addressing the evolutionary genomics of dog domestication, principally through resequencing dog, wolf and related canid genomes. There is, however, only one de novo assembled ...
  • Tracking five millennia of horse management with extensive ancient genome time series
    Fages, Antoine; Kuderna, Lukas F.K.; Marquès i Bonet, Tomàs, 1975-; Serres Armero, Aitor, 1992-; Orlando, Ludovic (Elsevier, 2019)
    Horse domestication revolutionized warfare and accelerated travel, trade, and the geographic expansion of languages. Here, we present the largest DNA time series for a non-human organism to date, including genome-scale ...
  • Two hundred and five newly assembled mitogenomes provide mixed evidence for rivers as drivers of speciation for Amazonian primates
    Janiak, Mareike C.; Silva, Felipe E.; Beck, Robin M. D.; de Vries, Dorien; Kuderna, Lukas F.K.; Torosin, Nicole S.; Melin, Amanda D.; Marquès i Bonet, Tomàs, 1975-; Goodhead, Ian B.; Messias, Mariluce; da Silva, Maria N. F.; Sampaio, Iracilda; Farias, Izeni P.; Rossi, Rogerio; de Melo, Fabiano R.; Valsecchi, João; Hrbek, Tomas; Boubli, Jean P. (Wiley, 2022)
    Mitochondrial DNA remains a cornerstone for molecular ecology, especially for study species from which high-quality tissue samples cannot be easily obtained. Methods using mitochondrial markers are usually reliant on ...
  • Whole-genome sequence analysis of a Pan African set of samples reveals archaic gene flow from an extinct basal population of modern humans into sub-Saharan populations
    Lorente-Galdós, Belén, 1981-; Lao Grueso, Oscar, 1976-; Serra Vidal, Gerard, 1989-; Santpere Baró, Gabriel, 1981-; Kuderna, Lukas F.K.; Arauna, Lara R; Fadhlaoui-Zid, Karima; Pimenoff, Ville N.; Soodyall, Himla; Zalloua, Pierre A.; Marquès i Bonet, Tomàs, 1975-; Comas, David, 1969- (BioMed Central, 2019)
    Background: Population demography and gene flow among African groups, as well as the putative archaic introgression of ancient hominins, have been poorly explored at the genome level. Results: Here, we examine 15 African ...
  • Y chromosome sequence and epigenomic reconstruction across human populations
    Esteller Cucala, Paula; Palmada-Flores, Marc; Kuderna, Lukas F.K.; Fontseré Alemany, Clàudia, 1992-; Serres Armero, Aitor, 1992-; Dabad, Marc; Torralvo, María; Faella, Armida; Ferrández Peral, Luis, 1991-; Llovera Nadal, Laia; Fornas Carreño, Oscar; Julià, Eva; Ramírez, Erika; González, Irene; Hecht, Jochen; Lizano González, Esther, 1974-; Juan, David; Marquès i Bonet, Tomàs, 1975- (Nature Research, 2023)
    Recent advances in long-read sequencing technologies have allowed the generation and curation of more complete genome assemblies, enabling the analysis of traditionally neglected chromosomes, such as the human Y chromosome ...