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Visualitza Articles (Departament de Medicina i Ciències de la Vida) per matèria "Computational models"

Visualitza Articles (Departament de Medicina i Ciències de la Vida) per matèria "Computational models"

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  • Pedone, Elisa, 1985-; Postiglione, Lorena; Aulicino, Francesco, 1987-; Rocca, Dan L.; Montes Olivas, Sandra; Khazim, Mahmoud; di Bernardo, Diego; Cosma, Maria Pia; Marucci, Lucia (Nature Research, 2019)
    Cellular systems have evolved numerous mechanisms to adapt to environmental stimuli, underpinned by dynamic patterns of gene expression. In addition to gene transcription regulation, modulation of protein levels, dynamics ...
  • Li, Xianghua; Lalić, Jasna; Baeza Centurión, Pablo, 1989-; Dhar, Riddhiman; Lehner, Ben, 1978- (Nature Research, 2019)
    Non-additive interactions between mutations occur extensively and also change across conditions, making genetic prediction a difficult challenge. To better understand the plasticity of genetic interactions (epistasis), we ...
  • Kalmykova, Svetlana; Kalinina, Marina; Denisov, Stepan; Mironov, Alexey; Skvortsov, Dmitry; Guigó Serra, Roderic; Pervouchine, Dmitri D. (Nature Research, 2021)
    The ability of nucleic acids to form double-stranded structures is essential for all living systems on Earth. Current knowledge on functional RNA structures is focused on locally-occurring base pairs. However, crosslinking ...
  • Munteanu, Andreea; Cotterell, James; Solé Vicente, Ricard, 1962-; Sharpe, James (Nature Publishing Group, 2014)
    Interpreting a morphogen gradient into a single stripe of gene-expression is a fundamental unit of patterning in early embryogenesis. From both experimental data and computational studies the feed-forward motifs stand out ...
  • Rodríguez Galindo, Miguel; Casillas, Sònia; Weghorn, Donate; Barbadilla, Antonio (Nature Research, 2020)
    A main assumption of molecular population genetics is that genomic mutation rate does not depend on sequence function. Challenging this assumption, a recent study has found a reduction in the mutation rate in exons compared ...
  • Buitrago, Diana; Labrador, Mireia; Arcon, Juan Pablo; Lema, Rafael; Flores, Oscar; Esteve-Codina, Anna; Blanc, Julie; Villegas, Núria; Bellido, David; Gut, Marta; Dans, Pablo D.; Heath, Simon; Gut, Ivo Glynne; Brun-Heath, Isabelle; Orozco, Modesto (Nature Research, 2021)
    Determining the effect of DNA methylation on chromatin structure and function in higher organisms is challenging due to the extreme complexity of epigenetic regulation. We studied a simpler model system, budding yeast, ...
  • Briggs, Katharine; Cases, Montserrat; Heard, David J.; Pastor Maeso, Manuel; Pognan, François; Sanz, Ferran; Schwab, Christof H.; Steger-Hartmann, Thomas; Sutter, Andreas; Watson, David K.; Wichard, Jörg (MDPI, 2012)
    There is a widespread awareness that the wealth of preclinical toxicity data that the pharmaceutical industry has generated in recent decades is not exploited as efficiently as it could be. Enhanced data availability for ...
  • Shirt-Ediss, Ben; Ruíz-Mirazo, Kepa; Mavelli, Fabio; Solé Vicente, Ricard, 1962- (Nature Publishing Group, 2014)
    Recent experimental work in the field of synthetic protocell biology has shown that prebiotic vesicles are able to ‘steal’ lipids from each other. This phenomenon is driven purely by asymmetries in the physical state or ...
  • Zapata Ortiz, Luis, 1985-; Sušak, Hana, 1985-; Drechsel, Oliver; Friedländer, Marc R.; Estivill, Xavier, 1955-; Ossowski, Stephan (Nature Publishing Group, 2017)
    Tumors are composed of an evolving population of cells subjected to tissue-specific selection, which fuels tumor heterogeneity and ultimately complicates cancer driver gene identification. Here, we integrate cancer cell ...
  • Cortini, Ruggero; Filion, Guillaume (Nature Research, 2018)
    All organisms regulate transcription of their genes. To understand this process, a complete understanding of how transcription factors find their targets in cellular nuclei is essential. The DNA sequence and other variables ...

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