Browsing Recerca: articles, congressos, llibres by Subject "Bioinformàtica"

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Browsing Recerca: articles, congressos, llibres by Subject "Bioinformàtica"

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  • Blanco, Enrique; Farré, Domènec; Albà Soler, Mar; Messeguer, Xavier; Guigó Serra, Roderic (Oxford University Press, 2006)
    Information about the genomic coordinates and the sequence of experimentally identified transcription factor binding sites is found scattered under a variety of diverse formats. The availability of standard collections of ...
  • Frankish, Adam; Uszczynska, Barbara; Ritchie, Graham RS; González, José M.; Pervouchine, Dmitri D.; Petryszak, Robert; Mudge, Jonathan M; Fonseca, Nuno; Brazma, Alvis; Guigó Serra, Roderic; Harrow, Jennifer (BioMed Central, 2015)
    Background: A vast amount of DNA variation is being identified by increasingly large-scale exome and genome sequencing projects. To be useful, variants require accurate functional annotation and a wide range of tools are ...
  • Reese, Martin G.; Guigó Serra, Roderic (BioMed Central, 2006)
  • Guigó Serra, Roderic; Flicek, Paul; Abril Ferrando, Josep Francesc; Reymond, Alexandre; Lagarde, Julien; Denoeud, France; Antonarakis, Stylianos E.; Ashburner, Michael; Bajic, Vladimir B.; Birney, Ewan; Castelo Valdueza, Robert; Eyras Jiménez, Eduardo; Ucla, Catherine; Gingeras, Thomas R.; Harrow, Jennifer; Hubbard, Tim J.; Lewis, Suzanna E.; Reese, Martin G. (BioMed Central, 2006)
    Background: We present the results of EGASP, a community experiment to assess the state-ofthe- art in genome annotation within the ENCODE regions, which span 1% of the human genome sequence. The experiment had two major ...
  • Bravo, Àlex; Piñero Gonzalez, Janet; Queralt Rosinach, Núria; Rautschka, Michael; Furlong, Laura I., 1971- (BioMed Central, 2015)
    BACKGROUND: Current biomedical research needs to leverage and exploit the large amount of information reported in scientific publications. Automated text mining approaches, in particular those aimed at finding relationships ...
  • Harrow, Jennifer; Denoeud, France; Frankish, Adam; Reymond, Alexandre; Chen, Chao-Kung; Chrast, Jacqueline; Lagarde, Julien; Gilbert, James; Storey, Roy; Swarbreck, David; Rossier, Colette; Ucla, Catherine; Hubbard, Tim J.; Antonarakis, Stylianos E.; Guigó Serra, Roderic (BioMed Central, 2006)
    Background: The GENCODE consortium was formed to identify and map all protein-coding genes within the ENCODE regions. This was achieved by a combination of initial manual annotation by the HAVANA team, experimental ...
  • Berenstein, Ariel José; Piñero Gonzalez, Janet; Furlong, Laura I., 1971-; Chernomoretz, Ariel (Public Library of Science, 2015)
    BACKGROUND: Cluster-based descriptions of biological networks have received much attention in recent years fostered by accumulated evidence of the existence of meaningful correlations between topological network clusters ...
  • Bauer-Mehren, Anna; Furlong, Laura I., 1971-; Sanz, Ferran (Nature Publishing Group, 2009)
    In past years, comprehensive representations of cell signalling pathways have been developed by manual curation from literature, which requires huge effort and would benefit from information stored in databases and from ...
  • Janssens, Hilde; Siggens, Ken; Cicin Sain, Damjan; Jiménez Guri, Eva; Musy, Marco; Akam, Michael; Jaeger, Johannes, 1973- (BioMed Central, 2014)
    Background: Comparative studies of developmental processes are one of the main approaches to evolutionary developmental biology (evo-devo). Over recent years, there has been a shift of focus from the comparative study of ...
  • Lladós, Jordi; Guirado, Fernando; Cores, Fernando; Lérida, Josep Lluís; Notredame, Cedric (Springer, 2015)
    Multiple sequence alignment (MSA) is crucial for high-throughput next generation sequencing applications. Large-scale alignments with thousands of sequences are necessary for these applications. However, the quality of the ...
  • Castellano Hereza, Sergi; Gladyshev, Vadim N.; Guigó Serra, Roderic; Berry, Marla J. (Oxford University Press, 2008)
    Selenoproteins are a diverse group of proteins usually misidentified and misannotated in sequence databases. The presence of an in-frame UGA (stop) codon in the coding sequence of selenoprotein genes precludes their ...
  • Zorita, Eduard; Cuscó Pons, Pol; Filion, Guillaume (Oxford University Press, 2015)
    Motivation: The increasing throughput of sequencing technologies offers new applications and challenges for computational biology. In many of those applications, sequencing errors need to be corrected. This is particularly ...
  • Di Tommaso, Paolo; Palumbo, Emilio; Chatzou, Maria; Prieto Barja, Pablo; Heuer, Michael L.; Notredame, Cedric (PeerJ Inc., 2015)
    Genomic pipelines consist of several pieces of third party software and, because of their experimental nature, frequent changes and updates are commonly necessary thus raising serious deployment and reproducibility issues. ...

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